CI now uses Mambaforge. Revised test_specclassify_install CI job.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

.gitlab-ci.yml

@@ -10,12 +10,10 @@ stages:
 test_specclassify:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - make nosetests
 
     # create the docs
-    - pip install sphinx_rtd_theme  # Read-the-docs theme for SPHINX documentation
-    - pip install sphinx-autodoc-typehints
     - make docs
   artifacts:
     paths:
@@ -29,7 +27,7 @@ test_specclassify:
 test_styles:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - make lint
   artifacts:
     paths:
@@ -42,7 +40,7 @@ test_styles:
 test_urls:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - pip install -U urlchecker
     - make urlcheck
   when: always
@@ -51,17 +49,12 @@ test_urls:
 test_specclassify_install:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate
+    - source /root/mambaforge/bin/activate
+    - mamba update -n base -c conda-forge --all
 
-    # update conda and python
-    - conda update -n base -c conda-forge conda
-    # - conda update -c conda-forge python
-
-    - conda create -y -q --name specclassify_testinstall python=3
-    - conda activate specclassify_testinstall
-
-    # resolve some requirements with conda
-    - conda install --yes -q -c conda-forge numpy gdal scikit-image matplotlib pyproj shapely geopandas
+    # create arosics environment from environment_arosics.yml
+    - mamba env create --name specclassify_test -f tests/CI_docker/context/environment_specclassify.yml
+    - conda activate specclassify_test
 
     # run installer
     - python setup.py install
@@ -116,7 +109,7 @@ deploy_pypi:
   dependencies:
     - test_specclassify
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - pip install -U twine
     - python setup.py sdist
     - twine upload dist/*  # requires creds as environment variables

tests/CI_docker/context/environment_specclassify.yml

@@ -26,5 +26,7 @@ dependencies:
     - pydocstyle
     - rednose
     - sphinx-argparse
+    - sphinx-autodoc-typehints
+    - sphinx_rtd_theme
     - dill
     - urlchecker

tests/CI_docker/context/specclassify_ci.docker

-FROM ci_base_centos:0.1
+FROM ci_base_centos:0.2
 
 # copy some needed stuff to /root
 COPY *.yml /root/
 
 # update the ci_env environment (that already contains all packages installed via 'docker_pyenvs' repo)
 RUN /bin/bash -i -c "\
-    source /root/miniconda3/bin/activate ; \
-    conda update -n base -c conda-forge conda;\
+    source /root/mambaforge/bin/activate ; \
+    mamba update -n base -c conda-forge --all;\
     conda activate ci_env; \
-    conda env update -n ci_env -f /root/environment_specclassify.yml"
+    mamba env update -n ci_env -f /root/environment_specclassify.yml"