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attempt to fix >AttributeError: "list" object has no attribute "shape"< in...

Kyriakos Balidakis requested to merge balidak-master-patch-76979 into master

attempt to fix >AttributeError: "list" object has no attribute "shape"< in >covariance.py< for >l = region_coords.shape[0]<; seems to work for -m/-u flags now

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