import copy import os import numpy as num from pyrocko import util, model, orthodrome, pile from pyrocko.gui import snuffler from pyrocko.gui import marker as pmarker from pyrocko.gui import util as gui_util from pyrocko.gui.snuffling import Snuffling, Param, Choice, Switch from lassie import geo, ifc kind_default = '1 (green)' def detections_to_event_markers(fn_detections): markers = [] if fn_detections: with open(fn_detections, 'r') as f: for line in f.readlines(): data = line.split() i, t_d, t_t, apeak, latpeak, lonpeak, xpeak, ypeak, zpeak = \ data lat, lon = orthodrome.ne_to_latlon( float(latpeak), float(lonpeak), float(xpeak), float(ypeak)) t = util.str_to_time("%s %s" % (t_d, t_t)) label = "%s-%s" % (apeak, i) e = model.Event(lat=lat, lon=lon, depth=float(zpeak), name=label, time=t) m = gui_util.EventMarker(e, kind=int(kind_default[0])) markers.append(m) return markers class LassieSnuffling(Snuffling): @property def __doc__(self): s = '''

Scrutinize Lassie Performance and Re-Detect

Adjust the detector threshold, press run. From every instant, where the signal rises above threshold, a time length of tsearch seconds is searched for a maximum. Detections are added as event markers to the viewer.

If you want to save the updated detections, it might be helpful to use the marker table (see Snuffler Tutorial at the bottom) to sort all markers by their kind.

Compare Lassie Detections with Reference Catalog


''' % self.show_comparison.__doc__ return s def __init__(self): Snuffling.__init__(self) self.config = None self.detections = [] def setup(self): if self.config: detector_default = self.config.detector_threshold else: detector_default = 100. self.set_name('Lassie investigate') self.add_parameter(Param('Tsearch', 'tsearch', 20., 0.01, 100)) self.add_parameter(Param( 'Detector threshold', 'detector_threshold', detector_default, 1., 10000.)) self.add_parameter(Switch('Level Trace', 'level_trace', False)) self.add_parameter(Switch( 'Hold comparison figure', 'hold_figure', False)) self.add_parameter(Choice( 'new marker kind', 'marker_kind', kind_default, ['1 (green)', '2 (blue)', '3 (orange)', '4 (purple)', '5 (brown)', '0 (red)'])) self.add_trigger('load reference', self.load_comparison) self.add_trigger('show comparison', self.show_comparison) self.add_trigger('remove comparison', self.remove_comparison) # self.add_trigger('read Lassie config', self.set_live_update(True) self.markers_compare = [] self.detections = [] self.fig = None self.fframe = None self.grid = self.config.get_grid() def mycleanup(self): viewer = self.get_viewer() viewer.release_data(self._tickets) viewer.remove_markers(self.detections) self._tickets = [] self._markers = [] def call(self): self.mycleanup() self.detections = [] i_detection = 0 zpeak = 0. lat = 0. lon = 0. for traces in self.chopper_selected_traces( mode='all', trace_selector=lambda x: x.station == "SMAX", fallback=True): tr_smax = [tr for tr in traces if tr.location == ''] tr_i = [tr for tr in traces if tr.location == 'i'] if not tr_i: tr_i = [None] * len(tr_smax) for tr_i, tr_stackmax in zip(tr_i, tr_smax): tpeaks, apeaks = tr_stackmax.peaks( self.detector_threshold, self.tsearch) if self.level_trace: ltrace = tr_stackmax.copy(data=False) ltrace.set_ydata( num.ones( tr_stackmax.data_len()) * self.detector_threshold) self.add_trace(ltrace) for t, a in zip(tpeaks, apeaks): if tr_i: lat, lon, xpeak, ypeak, zpeak = \ self.grid.index_to_location(tr_i(t)[1]) lat, lon = orthodrome.ne_to_latlon( lat, lon, xpeak, ypeak) e = model.Event( time=t, name="%s-%s" % (i_detection, a), lat=lat, lon=lon, depth=zpeak) self.detections.append( gui_util.EventMarker( event=e, kind=int(self.marker_kind[0]))) i_detection += 1 self.add_markers(self.detections) if self.hold_figure: self.show_comparison() def load_comparison(self): ''' For comparison in synthetic tests. ''' fn = self.input_filename(caption='Select an event catalog') kind_compare = 4 compare_events = model.load_events(fn) markers = [gui_util.EventMarker(event=e, kind=kind_compare) for e in compare_events] self.markers_compare = markers self.add_markers(self.markers_compare) def remove_comparison(self): '''Remove comparison markers from viewer.''' self.get_viewer().remove_markers(self.markers_compare) def filter_visible(self, markers): vtmin, vtmax = self.get_viewer().get_time_range() return [x for x in markers if vtmin < x.tmin < vtmax] def show_comparison(self): ''' Iterates through reference catalog and searches for lassie detection candidates in a time window of +- 1.5 seconds around the reference. If multiple candidates are available selects the first as the matching lassie detection for this reference. This option requires the catalog to contain only pyrocko.model.Event instances. ''' scan_time = 3. # select_by = 'first' if not self.markers_compare:'No catalog to compare to') markers_compare = self.filter_visible(self.markers_compare) not_detected = [] detections_success = [] detections = copy.deepcopy(self.filter_visible(self.detections)) for i_m, mcompare in enumerate(markers_compare): detection_times = num.array([d.tmin for d in detections]) i_want = num.where(num.abs(detection_times - mcompare.tmin) < (scan_time / 2.))[0] if len(i_want) == 0: not_detected.append(mcompare) continue candidates = [detections[i] for i in i_want] # if select_by == 'first': matched_marker = min( candidates, key=lambda x: x.get_event().time) # elif select_by == 'strongest': # matched_marker = max( # candidates, key=lambda x: float(x.get_event().name)) detections_success.append((matched_marker, i_m)) for c in candidates: detections.remove(c) if self.hold_figure and self.fframe and not self.fframe.closed: self.fig.clf() else: self.fframe = self.pylab('Lassie', get='figure_frame') self.fig = self.fframe.gcf() ax = self.fig.add_subplot(111) compare_events = [x.get_event() for x in markers_compare] associated_events = [compare_events[a[1]] for a in detections_success] magnitudes = [e.get_event().magnitude for e in markers_compare] detected_magnitudes = [e.magnitude for e in associated_events] bins = num.linspace(-1, max(magnitudes), 30) ax.hist([detected_magnitudes, magnitudes], bins, label=['Lassie', 'Reference'], alpha=0.7) n_leftover_detections = len(detections) n_undetected = len(not_detected) ax.text( 0.05, 0.95, 'Other detections: %s\nNot detected: %s (%1.1f %%)' % (n_leftover_detections, n_undetected, (float(n_undetected)/len(markers_compare)*100.)), transform=ax.transAxes) ax.set_xlabel('Magnitude') ax.set_ylabel('N detections') ax.legend() self.fig.canvas.draw() def __snufflings__(): return [LassieSnuffling()] def snuffle(config): global _lassie_config _lassie_config = copy.deepcopy(config) for _ifc in _lassie_config.image_function_contributions: _ifc.setup(config) def load_snuffling(win): s = LassieSnuffling() s.config = _lassie_config s.setup() win.pile_viewer.viewer.add_snuffling(s, reloaded=True) win.pile_viewer.viewer.add_blacklist_pattern('*.SMAX.i.*') for bl in _lassie_config.blacklist: win.pile_viewer.viewer.add_blacklist_pattern('%s.*' % bl) detections_path = _lassie_config.get_detections_path() if os.path.exists(detections_path): s.detections = detections_to_event_markers(detections_path) s.add_markers(s.detections) for _ifc in s.config.image_function_contributions: if isinstance(_ifc, ifc.ManualPickIFC): markers_path_extra = _ifc.picks_path elif isinstance(_ifc, ifc.TemplateMatchingIFC): markers_path_extra = _ifc.template_markers_path s.add_markers(pmarker.load_markers(markers_path_extra)) receivers = config.get_receivers() stations = set() lats, lons = geo.points_coords(receivers, system='latlon') for ir, (lat, lon) in enumerate(zip(lats, lons)): n, s, l = receivers[ir].codes[:3] stations.add(model.Station( lat=lat, lon=lon, network=n, station=s, location=l)) paths = config.expand_path(config.data_paths) paths.append(config.get_ifm_dir_path()) p = pile.make_pile(paths=paths, fileformat='detect') meta = {'tabu': True} for tr in p.iter_traces(trace_selector=lambda x: x.station == 'SMAX'): if tr.meta: tr.meta.update(meta) else: tr.meta = meta snuffler.snuffle(p, stations=stations, launch_hook=load_snuffling) __all__ = [ 'snuffle']