Initial commit baraddur webgui

src/baraddur/server.py

+import tornado.ioloop
+import grond
+import os.path as op
+import numpy as np
+
+from collections import OrderedDict
+
+from tornado.web import RequestHandler, Application
+from tornado import gen
+
+from bokeh.application import Application as BokehApplication
+from bokeh.embed import autoload_server
+from bokeh.server.server import Server
+
+from bokeh.layouts import column
+from bokeh.models import ColumnDataSource, Slider
+from bokeh.application.handlers import FunctionHandler
+from bokeh.plotting import figure
+
+problem = grond.core.load_problem_info('.')
+
+
+class Summary(RequestHandler):
+    from bokeh.models import map_plots
+
+    @gen.coroutine
+    def get(self):
+        p = figure(plot_width=400, plot_height=400)
+        p.circle([1, 2, 3, 4, 5], [6, 7, 2, 4, 5], size=20, color="navy",
+                 alpha=0.5)
+
+        script = autoload_server(p, url='http://localhost:5001')
+        self.render('summary.html',
+                    pages=pages,
+                    problem=problem,
+                    script=script)
+
+
+class MainHandler(RequestHandler):
+    @gen.coroutine
+    def get(self):
+        self.render('index.html',
+                    pages=pages)
+
+
+pages = OrderedDict([
+    ('Summary', Summary),
+    ('Sequences', MainHandler),
+    ('Tradeoffs', MainHandler),
+])
+
+if __name__ == '__main__':
+    bokeh_app = BokehApplication()
+    bokeh_server = Server({'/bokeh': bokeh_app},
+                          ioloop=tornado.ioloop.IOLoop.instance(),
+                          num_procs=1)
+
+    tornado_app = Application(
+        [(r'/', Summary)] +
+        [(r'/%s' % title, handler) for title, handler in pages.iteritems()],
+        debug=False,
+        autoreload=False,
+        compiled_template_cache=False,
+        static_path=op.join(op.dirname(__file__), 'static'),
+        template_path=op.join(op.dirname(__file__), 'tpl'),
+        )
+    tornado_app.listen(8888)
+
+    tornado.ioloop.IOLoop.current().start()

src/baraddur/static/site.css

+body {
+    color: #000;
+}
+
+.pure-img-responsive {
+    max-width: 100%;
+    height: auto;
+}
+
+/*
+Add transition to containers so they can push in and out.
+*/
+#layout,
+#menu,
+.menu-link {
+    -webkit-transition: all 0.2s ease-out;
+    -moz-transition: all 0.2s ease-out;
+    -ms-transition: all 0.2s ease-out;
+    -o-transition: all 0.2s ease-out;
+    transition: all 0.2s ease-out;
+}
+
+/*
+This is the parent `<div>` that contains the menu and the content area.
+*/
+#layout {
+    position: relative;
+    left: 0;
+    padding-left: 0;
+}
+    #layout.active #menu {
+        left: 150px;
+        width: 150px;
+    }
+
+    #layout.active .menu-link {
+        left: 150px;
+    }
+/*
+The content `<div>` is where all your content goes.
+*/
+
+.footer {
+    margin: 3 3em;
+    padding: 1 0em;
+    margin-bottom: 0px;
+    line-height: 3em;
+    text-align: center;
+    color: #999;
+    background-color: #fbfbfb;
+    border-top: 1px solid #e8e8e8;
+}
+
+.header {
+     margin: 0;
+     color: #666;
+     text-align: center;
+     padding: 2.5em 2em 0;
+     border-bottom: 1px solid #e3e3e3;
+ }
+    .header h1 {
+        margin: 0.2em 0;
+        font-size: 3em;
+        font-weight: 300;
+    }
+     .header h2 {
+        font-weight: 300;
+        color: #ccc;
+        padding: 0;
+        margin-top: 0;
+    }
+
+.content-subhead {
+    margin: 50px 0 20px 0;
+    font-weight: 300;
+    color: #888;
+}
+
+.content {
+    margin: 0 auto;
+    padding: 0 2em;
+    max-width: 800px;
+    margin-bottom: 50px;
+    line-height: 1.6em;
+}
+
+/*
+The `#menu` `<div>` is the parent `<div>` that contains the `.pure-menu` that
+appears on the left side of the page.
+*/
+
+#menu {
+    margin-left: -150px; /* "#menu" width */
+    width: 150px;
+    position: fixed;
+    top: 0;
+    left: 0;
+    bottom: 0;
+    z-index: 1000; /* so the menu or its navicon stays above all content */
+    overflow-y: auto;
+    -webkit-overflow-scrolling: touch;
+}
+    /*
+    All anchors inside the menu should be styled like this.
+    */
+    #menu a {
+        color: #999;
+        border: none;
+        padding: 0.6em 0 0.6em 0.6em;
+    }
+
+    /*
+    Remove all background/borders, since we are applying them to #menu.
+    */
+     #menu .pure-menu,
+     #menu .pure-menu ul {
+        border: none;
+        background: transparent;
+    }
+
+    /*
+    Add that light border to separate items into groups.
+    */
+    #menu .pure-menu ul,
+    #menu .pure-menu .menu-item-divided {
+        border-top: 1px solid #333;
+    }
+        /*
+        Change color of the anchor links on hover/focus.
+        */
+        #menu .pure-menu li a:hover,
+        #menu .pure-menu li a:focus {
+            background: #efefef;
+        }
+
+    /*
+    This styles the selected menu item `<li>`.
+    */
+    #menu .pure-menu-selected, {
+        background: #;
+    }
+        /*
+        This styles a link within a selected menu item `<li>`.
+        */
+        #menu .pure-menu-selected a {
+            color: #efefef;
+        }
+
+    /*
+    This styles the menu heading.
+    */
+    #menu .pure-menu-heading {
+        font-size: 110%;
+        margin: 0;
+    }
+
+/* -- Dynamic Button For Responsive Menu -------------------------------------*/
+
+/*
+The button to open/close the Menu is custom-made and not part of Pure. Here's
+how it works:
+*/
+
+/*
+`.menu-link` represents the responsive menu toggle that shows/hides on
+small screens.
+*/
+.menu-link {
+    position: fixed;
+    display: block; /* show this only on small screens */
+    top: 0;
+    left: 0; /* "#menu width" */
+    background: #000;
+    background: rgba(0,0,0,0.7);
+    font-size: 10px; /* change this value to increase/decrease button size */
+    z-index: 10;
+    width: 2em;
+    height: auto;
+    padding: 2.1em 1.6em;
+}
+
+    .menu-link:hover,
+    .menu-link:focus {
+        background: #000;
+    }
+
+    .menu-link span {
+        position: relative;
+        display: block;
+    }
+
+    .menu-link span,
+    .menu-link span:before,
+    .menu-link span:after {
+        background-color: #fff;
+        width: 100%;
+        height: 0.2em;
+    }
+
+        .menu-link span:before,
+        .menu-link span:after {
+            position: absolute;
+            margin-top: -0.6em;
+            content: " ";
+        }
+
+        .menu-link span:after {
+            margin-top: 0.6em;
+        }
+
+
+/* -- Responsive Styles (Media Queries) ------------------------------------- */
+
+/*
+Hides the menu at `48em`, but modify this based on your app's needs.
+*/
+@media (min-width: 48em) {
+
+    .header,
+    .content {
+        padding-left: 2em;
+        padding-right: 2em;
+    }
+
+    #layout {
+        padding-left: 150px; /* left col width "#menu" */
+        left: 0;
+    }
+    #menu {
+        left: 150px;
+    }
+
+    .menu-link {
+        position: fixed;
+        left: 150px;
+        display: none;
+    }
+
+    #layout.active .menu-link {
+        left: 150px;
+    }
+}
+
+@media (max-width: 48em) {
+    /* Only apply this when the window is small. Otherwise, the following
+    case results in extra padding on the left:
+        * Make the window small.
+        * Tap the menu to trigger the active state.
+        * Make the window large again.
+    */
+    #layout.active {
+        position: relative;
+        left: 150px;
+    }
+}
\ No newline at end of file

src/baraddur/static/ui.js

+(function (window, document) {
+
+    var layout   = document.getElementById('layout'),
+        menu     = document.getElementById('menu'),
+        menuLink = document.getElementById('menuLink'),
+        content  = document.getElementById('main');
+
+    function toggleClass(element, className) {
+        var classes = element.className.split(/\s+/),
+            length = classes.length,
+            i = 0;
+
+        for(; i < length; i++) {
+          if (classes[i] === className) {
+            classes.splice(i, 1);
+            break;
+          }
+        }
+        // The className is not found
+        if (length === classes.length) {
+            classes.push(className);
+        }
+
+        element.className = classes.join(' ');
+    }
+
+    function toggleAll(e) {
+        var active = 'active';
+
+        e.preventDefault();
+        toggleClass(layout, active);
+        toggleClass(menu, active);
+        toggleClass(menuLink, active);
+    }
+    menuLink.onclick = function (e) {
+        toggleAll(e);
+    };
+
+    content.onclick = function(e) {
+        if (menu.className.indexOf('active') !== -1) {
+            toggleAll(e);
+        }
+    };
+
+}(this, this.document));

src/baraddur/tpl/index.html

+<!doctype html>
+<html lang="en">
+<head>
+    <meta charset="utf-8">
+    <title>Grond | Barad-dur</title>
+    <link rel="stylesheet" href="https://unpkg.com/purecss@0.6.2/build/pure-min.css" integrity="sha384-UQiGfs9ICog+LwheBSRCt1o5cbyKIHbwjWscjemyBMT9YCUMZffs6UqUTd0hObXD" crossorigin="anonymous">
+    <link rel="stylesheet" href="https://unpkg.com/purecss@0.6.2/build/grids-responsive-min.css">
+    <link rel="stylesheet" href="/static/site.css">
+</head>
+<style>
+.custom-restricted-width {
+    /* To limit the menu width to the content of the menu: */
+    display: inline-block;
+    /* Or set the width explicitly: */
+    /* width: 10em; */
+}
+</style>
+<div id="layout" class="pure-g">
+    <a href="#menu" id="menuLink" class="menu-link">
+        <!-- Hamburger icon -->
+        <span></span>
+    </a>
+    <div id="menu">
+        <div class="sidebar pure-u-1 pure-u-md-1-5">
+            <div class="pure-menu custom-restricted-width">
+                <span class="pure-menu-heading">Grond</span>
+                <ul class="pure-menu-list">
+                    {% for page in pages.iterkeys() %}
+                        <li class="pure-menu-item"><a href="/{{ page }}" class="pure-menu-link">{{ page }}</a></li>
+                    {% end %}
+                </ul>
+
+            </div>
+        </div>
+    </div>
+    <div id="main">
+        <div class="content pure-u-1 pure-u-md-4-5">
+                {% block content %}
+                    <h1 class="content-subhead">Content not implemented.</h1>
+                {% end %}
+        </div>
+        <div class="footer pure-u-1">
+            Grond - <i>The earthquake buster</i> <a href="http://pyrocko.org" class="pure-button pure-button-primary" style="margin-left: 1em;">pyrocko.org</a>
+        </div>
+    </div>
+</div>
+<script src="/static/ui.js"></script>
+</html>
\ No newline at end of file

src/baraddur/tpl/summary.html

+{% extends "index.html" %}
+
+{% block content %}
+<header>
+    <h1 class="content-subhead">Problem <i>{{ problem.name }}</i></h1>
+    <p><span style="font-family: monospace;">{{ problem.__class__.__name__ }}</span> | <span style="font-family: monospace;">{{ problem.base_source.__class__.__name__ }}</span></p>
+</header>
+<div class="pure-g">
+    <div class="pure-u-1 pure-u-md-1 pure-u-lg-1-2">
+        <h2 class="content-subhead">Initial model</h3>
+        <p>Initial at start of the optimization.</p>
+        <table class="pure-table pure-table-horizontal">
+            <thead>
+                <tr>
+                    <td>Parameter</td>
+                    <td>Value</td>
+                </tr>
+            </thead>
+            <tbody>
+                {% for ip, key in enumerate(problem.base_source.keys()) %}
+                    <tr{% if ip % 2 == 1 %} class="pure-table-odd"{% end %}>
+                        <td style="font-family: monospace;">{{ key }}</td>
+                        <td>{{ problem.base_source[key] }}</td>
+                    </tr>
+                {% end %}
+            </tbody>
+        </table>
+    </div>
+    <div class="pure-u-1 pure-u-md-1 pure-u-lg-1-2">
+        <h2 class="content-subhead">Free Parameters</h2>
+        <p>Ranges of free parameters.</p>
+        <table class="pure-table pure-table-horizontal">
+            <thead>
+                <tr>
+                    <td colspan=2>Parameter</td>
+                    <td>Allowed Ranges</td>
+                    <td>Unit</td>
+                </tr>
+            </thead>
+            <tbody>
+                {% for ip, param in enumerate(problem.parameters) %}
+                    <tr{% if ip % 2 == 1 %} class="pure-table-odd"{% end %}>
+                        <td>{{ ip+1 }}.</td>
+                        <td style="font-family: monospace;">{{ param.name }}</td>
+                        <td>{{ problem.ranges[param.name] }}</td>
+                        <td>{{ param.unit }}</td>
+                    </tr>
+                {% end %}
+            </tbody>
+        </table>
+    </div>
+    <div class="pure-u-5-5">
+        <h2 class="content-subhead">Map of initial model</h2>
+        <div>
+            {% raw script %}
+        </div>
+    </div>
+</div>
+{% end %}
\ No newline at end of file