diff --git a/docs/HabitatSampler.Rmd b/docs/HabitatSampler.Rmd index b0b5a45b7fa0a82b9780434e511fd67f55a28992..3aa4688098388cecd1cd48a165a1c38f5dae11a2 100644 --- a/docs/HabitatSampler.Rmd +++ b/docs/HabitatSampler.Rmd @@ -4,10 +4,13 @@ author: "Carsten Neumann, Alison Beamish, Romulo Goncalves" date: "01/06/2021" output: md_document: - pandoc_args: ["-output", "README.md"] + pandoc_args: ["--output", "README.md"] toc: true toc_depth: 2 variant: gfm + pdf_document: + toc: true + toc_depth: 2 html_document: theme: united highlight: tango @@ -17,9 +20,6 @@ output: collapsed: false smooth_scroll: false df_print: paged - pdf_document: - toc: true - toc_depth: 2 always_allow_html: yes header-includes: - \usepackage{caption} @@ -265,13 +265,13 @@ Habitat sampling output. R object that contains: ``` ### 4.1.2 Interactive probability maps and downloading output -An interactive map is plotted in a web browser (e.g., Firefox for Linux) containing a selected habitat type. The probability threshold can be viewed by hovering the mouse over the map. +An interactive map is plotted in a web browser (e.g., Firefox for Linux) containing a selected habitat type. The number of models predicting this habitat type can be viewed by hovering the mouse over the map. -![](./images/inter_map_ex.png){width=65%} +![](./images/inter_map_ex_new.png){width=65%} From this interactive map, the user has two choices: -1. Extract class type on the basis of a threshold if the probability map meets the user's evaluation +1. Extract class type on the basis of a threshold (minimum number of models assigning a pixel to that class type) if the probability map meets the user's evaluation If the user chooses to extract the class, a user defined threshold is entered into the R console and the following files are saved: diff --git a/docs/HabitatSampler.html b/docs/HabitatSampler.html index 3764423e24694f03da5235c63afa5f5ec2b615ce..37314c0da2f089eee42c0ef51abc119c4819077e 100644 --- a/docs/HabitatSampler.html +++ b/docs/HabitatSampler.html @@ -15,2557 +15,28 @@ An Introduction to Habitat Sampler - - - - - - - - - - - - - - + +