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Habitat Sampler
HabitatSampler
Commits
45ef975f
Commit
45ef975f
authored
Jul 07, 2021
by
Romulo Pereira Goncalves
Browse files
Merge branch 'kml_kmz_check' into 'master'
Check if either kml or kmz files exist. See merge request
!22
parents
82fbde22
2974c5c1
Pipeline
#25395
passed with stages
in 10 minutes and 23 seconds
Changes
3
Pipelines
1
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Inline
Side-by-side
R-package/R/outer_procedure.r
View file @
45ef975f
...
...
@@ -28,7 +28,7 @@
#' @param plot_on_browser plot on the browser or inline in a notebook (default TRUE)
#'
#' @return 4 files per step:
#' 1) Habitat type probability map as geocoded *.km
l layer and *.tif raster files
and
*.png image output
#' 1) Habitat type probability map as geocoded *.km
z file (with a *.kml layer
and *.png image output
), and *.tif raster file
#' 2) A Habitat object (only if save_runs is set to TRUE) consisting of 7 slots: \cr
#' run1@models - list of selcted classifiers \cr
#' run1@ref_samples - list of SpatialPointsDataFrames with same length as run1@models holding reference labels [1,2] for each selected model \cr
...
...
R-package/R/plot_results.r
View file @
45ef975f
...
...
@@ -12,6 +12,23 @@
#'
#' @export
plot_results
<-
function
(
inPath
,
color
=
NULL
)
{
num_files
<-
length
(
list.files
(
inPath
,
pattern
=
".kmz$"
,
all.files
=
FALSE
,
include.dirs
=
TRUE
,
no..
=
TRUE
))
if
(
num_files
==
0
)
{
num_files
<-
length
(
list.files
(
inPath
,
pattern
=
".kml$"
,
all.files
=
FALSE
,
include.dirs
=
TRUE
,
no..
=
TRUE
))
}
# Compares the number of .png to that of step_*.tif. If step_*.tif files are missing the
# user's attention is drawn.
...
...
@@ -21,14 +38,8 @@ plot_results <- function(inPath, color = NULL) {
all.files
=
FALSE
,
include.dirs
=
TRUE
,
no..
=
TRUE
))
!=
length
(
list.files
(
inPath
,
pattern
=
".png$"
,
all.files
=
FALSE
,
include.dirs
=
TRUE
,
no..
=
TRUE
)))
{
message
(
"Make sure the number of the step_*.tif files fits to the number of the .png files and that
))
!=
num_files
)
{
message
(
"Make sure the number of the step_*.tif files fits to the number of the step_*.km(l|z) files and that
there are no other files from previous runs.
If you have resumed a run, then the data of the aborted and the continued run needs
to be in the Results directory. You need them for plotting the classification map."
)
...
...
R-package/man/multi_Class_Sampling.Rd
View file @
45ef975f
...
...
@@ -83,7 +83,7 @@ multi_Class_Sampling(
\v
alue{
4 files per step:
\enumerate{
\item Habitat type probability map as geocoded *.km
l layer and *.tif raster files
and
*.png image output
\item Habitat type probability map as geocoded *.km
z file (with a *.kml layer
and *.png image output
), and *.tif raster file
\item A Habitat object (only if save_runs is set to TRUE) consisting of 7 slots: \cr
run1@models - list of selcted classifiers \cr
run1@ref_samples - list of SpatialPointsDataFrames with same length as run1@models holding reference labels \link{1,2} for each selected model \cr
...
...
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