Commits · da9e145005c15c7a6f6fe89fb44ce9f4f90193a0 · geomultisens / gms_preprocessing

03 Nov, 2020 11 commits
- Bumped version to fix PyPI upload. · da9e1450
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  da9e1450
- Fixed linting. · 609105e4
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  609105e4
- Updated HISTORY.rst. · 52ecaae3
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  52ecaae3
- Adapted code to latest SICOR options files. Added minimal version of SICOR. · 222b4ba6
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  222b4ba6
- Deactivated sicor check within GMSEnvironment._check_nonpip_packages() as this... · 8e961042
  Daniel Scheffler authored Nov 03, 2020
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Deactivated sicor check within GMSEnvironment._check_nonpip_packages() as this is now installed via conda-forge.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  8e961042
- Fixed DeprecationWarning (Using or importing the ABCs from 'collections'... · 27f51f5e
  Daniel Scheffler authored Nov 03, 2020
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Fixed DeprecationWarning (Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working).

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  27f51f5e
- Added sklearn import in tests.__init__.py to avoid static TLS ImportError. · b940771c
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  b940771c
- Fixed linting in gms_preprocessing.__init__.py. · 734a14a1
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  734a14a1
- Replaced deprecated 'source activate' by 'conda activate'. · 59e71a95
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  59e71a95
- Added shebang to make run_gms.py executable. · 107ef6a4
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  107ef6a4
- Added conda badges to README.rst. · 13864f3d
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  13864f3d
14 Oct, 2020 1 commit

Use Redis class instead of deprecated StrictRedis. Clarify name discrepancy of... · 7fd177d8

Daniel Scheffler authored Oct 14, 2020


Use Redis class instead of deprecated StrictRedis. Clarify name discrepancy of redis between PyPI and conda-forge.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

7fd177d8

13 Oct, 2020 17 commits
- Added setup, test, doc, lint and dev requirements. First working release on... · 4c1fd144
  Daniel Scheffler authored Oct 13, 2020
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Added setup, test, doc, lint and dev requirements. First working release on PyPI. Updated version info.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  4c1fd144
- Fixed README.rst that could not be rendered by PyPI. · 4d818029
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  4d818029
- Replaced relative link by absolute URL in README.rst to make the README.rst work on PyPI. · d691a43d
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  d691a43d
- Added History/Changelog section to README.rst. History is now not appended to... · 262e0d72
  Daniel Scheffler authored Oct 13, 2020
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Added History/Changelog section to README.rst. History is now not appended to the PyPI README file anymore.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  262e0d72
- Added PyPI deployment job and updated setup.py accordingly. Updated version info. · 6d18505a
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  6d18505a
- Merge branch 'enhancement/revise_docker_env' into 'master' · c54c93b5
  Daniel Scheffler authored Oct 13, 2020
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Enhancement/revise docker env

See merge request !11
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  c54c93b5
- Corrected version info. · d7f8936d
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  d7f8936d
- Merge branch 'master' into 'enhancement/revise_docker_env' · de8a1094
  Daniel Scheffler authored Oct 13, 2020
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# Conflicts:
#   HISTORY.rst
#   gms_preprocessing/version.py
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  de8a1094
- Fixed broken CI. · 25f448cb
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  25f448cb
- Update HISTORY.rst. · f793cc86
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  f793cc86
- Allow some more version flexibility for scipy. · cfcf5df5
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  cfcf5df5
- Use conda to install scipy instead of pip. · a0c18973
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  a0c18973
- Fixed syntax. · 04e79cad
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  04e79cad
- Revised docker container setup files. · f2142724
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  f2142724
- Removed ecmwf-api-client installation as this is now included in SICOR. Pinned... · fb439c60
  Daniel Scheffler authored Oct 13, 2020
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Removed ecmwf-api-client installation as this is now included in SICOR. Pinned scipy to 1.1.0 in environment_gms_preprocessing.yml to make CI work for now.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  fb439c60
- Use conda instead of pip to install scipy. · de8500c6
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  de8500c6
- Added missing requirement 'openpyxl'. Replaced deprecated 'source activate' by... · 4a772d28
  Daniel Scheffler authored Oct 13, 2020
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Added missing requirement 'openpyxl'. Replaced deprecated 'source activate' by 'conda activate'. Pinned scipy to 1.1.0 in test_gms_preprocessing CI job to make CI work for now. Updated version info and HISTORY.rst.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  4a772d28
12 Oct, 2020 1 commit

Use SPDX license identifier and set all files to GLP3+ to be consistent with... · 6ecc002b

Daniel Scheffler authored Oct 12, 2020


Use SPDX license identifier and set all files to GLP3+ to be consistent with license headers in the source files. Excluded tests from being installed via 'pip install'. Set development status to 'stable'. Updated version info.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

6ecc002b

09 Oct, 2020 4 commits

Fix quotes issue #2 · 0e0d716b
Daniel Scheffler authored Oct 09, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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0e0d716b
Fix quotes issue. · 2965b2de
Daniel Scheffler authored Oct 09, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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2965b2de
Fixed wrong version pinning of spechomo and wrong package name. · 44870278
Daniel Scheffler authored Oct 09, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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44870278

Revised environment_gms_preprocessing.yml as the inhouse libs are now on... · c907efd9

Daniel Scheffler authored Oct 09, 2020


Revised environment_gms_preprocessing.yml as the inhouse libs are now on conda-forge. Adapted docker setup files to new installation procedure of sicor.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

c907efd9

07 Oct, 2020 1 commit
- Revised dependencies. Updated minimal version of arosics and geoarray. · 50de4305
  Daniel Scheffler authored Oct 07, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  50de4305
02 Oct, 2020 2 commits

Use bash syntax highlighting. · 0296248e
Daniel Scheffler authored Oct 02, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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0296248e

Updated requirements. Added CI job 'test_gms_preprocessing_install'. Updated... · 308b824e

Daniel Scheffler authored Oct 02, 2020


Updated requirements. Added CI job 'test_gms_preprocessing_install'. Updated installation instructions.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

308b824e

25 Sep, 2020 3 commits

Removed scikit-learn pinning in requirements.txt as this might force a pip... · c172757e

Daniel Scheffler authored Sep 25, 2020


Removed scikit-learn pinning in requirements.txt as this might force a pip install scikit-learn (which fails).

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

c172757e

Caught ValueError: I/O operation on closed file within GMS_logger.__del__.... · f6c00fb3

Daniel Scheffler authored Sep 25, 2020


Caught ValueError: I/O operation on closed file within GMS_logger.__del__. Fixed a static TLS ImportError during runtime of SICOR when scikit-learn>0.22 is imported. Added missing requirements numba and llvmlite to environment_gms_preprocessing.yml.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

f6c00fb3

Updated list of compatible Python versions. · 3170a358
Daniel Scheffler authored Sep 25, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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3170a358