1. 28 Feb, 2018 1 commit
  2. 27 Feb, 2018 1 commit
  3. 26 Feb, 2018 1 commit
  4. 23 Feb, 2018 1 commit
  5. 08 Feb, 2018 1 commit
  6. 05 Feb, 2018 1 commit
  7. 29 Jan, 2018 1 commit
  8. 13 Dec, 2017 1 commit
  9. 12 Dec, 2017 1 commit
  10. 05 Dec, 2017 1 commit
  11. 04 Dec, 2017 1 commit
  12. 28 Nov, 2017 1 commit
  13. 27 Nov, 2017 1 commit
  14. 24 Nov, 2017 1 commit
  15. 23 Nov, 2017 1 commit
  16. 20 Oct, 2017 1 commit
  17. 22 Sep, 2017 2 commits
    • Daniel Scheffler's avatar
      Refactored GEOPROCESSING, METADATA, Input_reader, Output_writer and... · e057d1e1
      Daniel Scheffler authored
      Refactored GEOPROCESSING, METADATA, Input_reader, Output_writer and SpatialIndexMediator. Deleted a lot of deprecated/unused code:
      GEOPROCESSING:
      - deleted many unused functions written by Robert Behling
      L1A_P:
      - deleted decompress()
      - deleted Layerstacking()
      L1B_P:
      - deleted functions related with SIFT/Orfeo toolbox co-registration
      L2A_P:
      - deleted get_DESHIFTER_configs()
      - deleted envifilehandling.py
      - deleted SRF_DB_2_PKL.py (content moved to output_writer
      gms_object:
      - deleted calc_mask_nodataOLD()
      METADATA:
      - deleted some unused functions written by Robert Behling
      - deleted sandbox module
      Former-commit-id: 36ab28d1
      Former-commit-id: 7d82a28a
      e057d1e1
    • Daniel Scheffler's avatar
      PEP-8 editing. Added style checkers. · 461c4953
      Daniel Scheffler authored
      Former-commit-id: b6a2f1b6
      Former-commit-id: f867b21f
      461c4953
  18. 06 Sep, 2017 1 commit
  19. 31 Aug, 2017 1 commit
  20. 30 Aug, 2017 1 commit
  21. 06 Jul, 2017 1 commit
  22. 30 Jun, 2017 1 commit
  23. 26 Jun, 2017 1 commit
  24. 09 Jun, 2017 1 commit
  25. 30 May, 2017 1 commit
    • Daniel Scheffler's avatar
      Added first TestCase, updated run-file, moved METADATA, gms_object and dataset... · e3b5ecd4
      Daniel Scheffler authored
      Added first TestCase, updated run-file, moved METADATA, gms_object and dataset to new submodule 'model'
      bin.run_gms:
      - added run_from_filenames() dummy
      geomultisens.model.METADATA:
      - get_EarthSunDistance(): fixed unclosed File warning
      tests.data:
      - added LC80010702013141LGN01.tar.gz
      - test_geomultisens:
          - added class BaseTestCases
          - added class Test_Landsat8_PreCollectionData
      updated __version__
      updated __versionalias__
      Former-commit-id: 2b978035
      Former-commit-id: e41b2f4a
      e3b5ecd4
  26. 23 May, 2017 2 commits
  27. 10 Apr, 2017 1 commit
  28. 27 Mar, 2017 1 commit
  29. 20 Mar, 2017 1 commit
    • Daniel Scheffler's avatar
      added support for new-style Sentinel-2 data provided as single granules · f5205e93
      Daniel Scheffler authored
       algorithms.L1A_PL1A_object:
       - archive_to_rasObj(): revised matching expression to match S2A files within archive
       algorithms.METADATA.METADATA:
       - Read_Sentinel2A_xmls(): revised matching expressions to find correct xml data
       io.Input_reader:
       - open_specific_file_within_archive(): added assertions, docstring and revised function style
      - updated __version__
      Former-commit-id: 0497218d
      Former-commit-id: 7cdf1a80
      f5205e93
  30. 15 Feb, 2017 1 commit
    • Daniel Scheffler's avatar
      Bugfix within AC · 770aa9f0
      Daniel Scheffler authored
      algorithms.L1C_P.AtmCorr:
      - options: bugfix for not excluding specific bands from AC output
      - _join_results_to_inObjs():
          - bugfix for stacking data_ac bands in the wrong order
          - NaN values withon data_ac are now set to outFill value
      - updated __version__
      Former-commit-id: 577c72b9
      Former-commit-id: 1460d9b2
      770aa9f0
  31. 26 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      revised calculation of acquisition geometry arrays for Landsat · 8c7a5323
      Daniel Scheffler authored
      algorithms.GEOPROCESSING:
      - calc_VAA_using_fullSceneCornerLonLat():
          - implemented keyword 'orbit_params' as fallback; added docstring
          -added 90 degrees to VAA
      - calc_VZA_array(): added some notes
      - calc_RAA_array(): added docstring
      algorithms.L1A_P.L1A_object():
      - calc_mean_VAA(): updated calc_VAA_using_fullSceneCornerLonLat call
      algorithms.L1C_P.L1C_object():
      - VZA_arr.getter: added parameter 'meshwidth'
      - revised VAA_arr.getter
      algorithms.METADATA:
      - get_orbit_params(): added some notes
      - updated __version__
      Former-commit-id: b8a055bf
      Former-commit-id: d08a8a57
      8c7a5323
  32. 24 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      algorithms.gms_object.GMS_object: · cef2a152
      Daniel Scheffler authored
      - from_tiles(): bugfix for not updating array-dependent attributes
      - from_sensor_subsystems(): bugfix for not recreating loggers after subsystem merging
      - removed deprecated MetaObj2ODict()
      - get_subset_obj(): now operable from imBounds; fixed inconsistent attribute names
      - added to_tiles()
      algorithms.L2B_P.L2B_object:
      - added log message
      algorithms.METADATA:
      - get_LayerbandsAssignment: bugfix
      misc.helper_functions:
      - cut_GMS_obj_into_blocks(): now calls GMS_object.to_tiles()
      - revised cornerLonLat_to_postgreSQL_poly()
      misc.mgrs_tile:
      - EPSG: bugfix
      processing.pipeline:
      - L1A_map_1() and L2A_map(): changed call for object conversion into tiles
      - removed /database/cloud_classifier from version controlling -> now external resource
      - updated __version__
      Former-commit-id: c9f38cb9
      Former-commit-id: 9b805282
      cef2a152
  33. 23 Jan, 2017 1 commit
  34. 21 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      first version fully operable for Sentinel-2 (including atmospheric correction and cloud masks) · 3282d365
      Daniel Scheffler authored
      algorithms.gms_object.GMS_object:
      - GMS_identifier: is only a getter now, not a singleton
      - added property 'MetaObj' / 'meta_odict' -> self-synchronizing
      - added LayerBandsAssignment.setter
      - revised arr.setter
      - revised mask_nodata.setter
      - mask_clouds.getter: bugfix
      - revised mask_clouds.setter
      - added property 'mask_clouds_confidence'
      - revised masks.setter
      - revised dem.setter
      - ac_options: number of CPUs are now passed (temporarily disabled)
      - revised ac_errors.setter
      - added LBA2bandnames
      - attributes2dict: bugfix for not addin meta_odict
      - revised from_tiles()
      - added from_sensor_subsystems(): a function for merging multiple subsystems of the same sensor (needed for Sentinel-2 and ASTER)
      - revised build_combined_masks_array()
      - get_subset_obj(): multiple bugfixes
      - to_GMS_file(): updated in the context of new property architecture
      - delete_previous_proc_level_results: added functionality to delete subsystem products after subsystems have been merged
      algorithms.gms_object.failed_GMS_object:
      - removed logger creation
      algorithms.L1A_P.L1A_object:
      - import_metadata(): updated METADATA call
      - calc_TOARadRefTemp: added warning when using Sentinel-2 Gains
      - calc_corner_positions(): added UTC timezone to datetime object
      algorithms.L1B_P.L1B_object:
      - _get_reference_image_params_pgSQL(): replaced temp_logger by self.logger
      - revised correct_spatial_shifts()
      algorithms.L1C_P:
      - L1C_object:
          - removed deprecated atm_corr()
      - AtmCorr:
          - __init__: added warning
          - revised data property
          - _meta_get_aux_data(): changed lonlat_arr to float16
          - run_atmospheric_correction(): added 'dump' keyword
          - revised _join_results_to_inObjs()
      algorithms.L2B_P.L2B_object:
      - spectral_homogenization(): bugfix
      algorithms.METADATA:
      - METADATA:
          - __init__(): is now initialized by GMS_identifier; does not directly run metadata reader
          - added read_meta()
          - Read_Sentinel2A_xmls(): updated setting of Gains
          - refactored to_meta_odict() to to_odict() and revised the function
          - added from_odict()
          - revised filter_layerdependent_metadata()
          - added 'map_odictKeys_objAttrnames'
          - get_LayerBandsAssignment():
              - added functionality to return full LBA for Sentinel-2 and ASTER
              - now properly handles bands removed after L1C and L2B
      io.Output_writer:
      - mask_to_ENVI_Classification(): bugfix
      misc.definition_dicts:
      - get_GMS_sensorcode(): added codes for Sentinel-2 full and ASTER full
      - get_outFillZeroSaturated(): added bool dtype
      - is_dataset_provided_as_fullScene(): added ASTER full and Sentinel-2 full
      misc.exception_handler:
      - log_uncaught_exceptions(): bugfix for 'disable_exception_handler'
      misc.helper_functions:
      - cut_GMS_obj_into_blocks(): bugfix
      misc.logging.GMS_logger:
      - added scene ID to formatter
      misc.mgrs_tile:
      - replaced deprecated reference
      misc.path_generator:
      - get_baseN(): bugfix
      - added get_path_ac_input_dump()
      processing.multiproc:
      - MAP: added functionality to disable multiprocessing
      processing.pipeline:
      - revised L2A_map(): new L2A calls
      processing.process_controller:
      - add_local_availability(): changed get_LayerBandsAssignment call
      - get_DB_objects(): bugfix for copied memory link during GMS object init
      - L1C_processing() raises NotImplementedError in tiled mode
      - L2A_processing(): added grouping of subsystems
      - updated __version__
      3282d365
  35. 16 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      third version of wrapper for atmospheric correction (first working version) · 6fa974e0
      Daniel Scheffler authored
      algorithms.GEOPROCESSING:
      - GEOPROCESSING: conversion_type_optical value renamed from 'Ref' to 'TOA_Ref' and 'BOA_Ref'
      - added keyword 'meshwidth' to the following functions (allows much faster processing):
          - zoom_2Darray_to_shapeFullArr()
          - adjust_acquisArrProv_to_shapeFullArr()
          - get_lonlat_coord_array():revised calculation of meshgrid
          - calc_VZA_array()
          - calc_AcqTime_array()
          - calc_SZA_SAA_array()
      - calc_RAA_array(): now receives a VAA_array instead of VAA_mean
      algorithms.gms_object:
      - added attributes 'fullSceneCornerPos' and 'fullSceneCornerPos'
      - logger: added assertion
      - added property 'log'
      - added dem deleter
      - revised property 'ac_options'
      - added property 'ac_errors'
      - added property 'subset'
      - refactored attribute 'acquisition_date' to 'acq_datetime' containing a full datetime timestamp in UTC time zone
      - to_GMS_file(): updated timestamp format
      algorithms.L1A_P.L1A_object:
      - get_MetaObj(): now also updates 'acq_datetime'
      - refactored get_MetaObj() to import_metadata()
      - included set_arr_desc_from_MetaObj() in import_metadata()
      - calc_TOARadRefTemp(): updated in the context of "conversion_type_optical" value change to 'TOA_Ref'
      - calc_cloud_mask(): temporarily excluded Sentinel-2 here; added code draft of S2A cloud mask calculation
      - calc_corner_positions(): major revision -> now calculates trueDataCornerPos/-LonLat AND fullSceneCornerPos/-LonLat
      - calc_center_AcqTime() now also updates 'acq_datetime'
      algorithms.L1B_P.ref_Scene:
      - moved _get_reference_image_params_pgSQL() and _sceneIDList_to_filt_overlap_scenes() to L1B_object
      algorithms.L1C_P.L1C_object:   -> major revision
      - added properties 'lonlat_arr', 'VZA_arr', 'VAA_arr', 'SZA_arr', 'SAA_arr', 'RAA_arr' based on get_lonlat_coord_array() and calc_acquisition_illumination_geometry()
      - removed deprecated functions get_lonlat_coord_array() and calc_acquisition_illumination_geometry()
      - revised delete_ac_input_arrays()
      algorithms.L1C_P.AtmCorr:
      - revised property 'logger'
      - metadata: added some tests
      - revised _meta_get_viewing_zenith(), _meta_get_viewing_azimuth(), _meta_get_relative_viewing_azimuth()
      - added _meta_get_aux_data()
      - added _get_dem()
      - added dummy version of _get_srf()
      - run_atmospheric_correction(): added docstring; some minor revisions
      - _join_results_to_inObjs(): now working
      algorithms.METADATA:
      - added property AcqDateTime: returns a full datetime object with UTC timezone
      - revised setters for AcqDate, AcqTime and AcqDateTime -> timezone now properly handled
      - refactored 'Meta2ODict' to 'to_meta_odict'
      - calc_center_acquisition_time(): now also sets AcqDateTime
      - get_LayerBandsAssignment(): processing level is now properly handled (in the context of missing bands after atmospheric correction)
      misc.database_tools:
      - renamed keyword 'trueDataCornerLonLat' to 'tgt_corners_lonlat' in the following functions:
          - get_pgSQL_geospatial_query_cond()
          - get_overlapping_scenes_from_postgreSQLdb()
          - get_overlapping_MGRS_tiles()
          - get_overlapping_MGRS_tiles2()
      misc.definitions_dicts:
      - added is_dataset_provided_as_fullScene()
      misc.exception_handler:
      - log_uncaught_exceptions:  exception handling is now optional and can be turned off via config
      misc.helper_functions:
      - modified some docstrings
      misc.logging.GMS_logger:
      - added property 'captured_stream' (not yet working)
      - added draft of StringIO handler (not yet working)
      misc.logging.path-generator:
      - get_path_srf_file: bugfix
      processing.pipeline:
      - L1A_map(): updated calls
      - L1A_map_1(): updated calls
      - revised L1C_map()
      processing.process_controller:
      - add_local_availability(): added comments and revised structure
      config:
      - Job:
          - added attribute 'disable_exception_handler'
          - added attribute 'scale_factor_BOARef'
          - added attribute 'scale_factor_errors_ac'
          - added assertion
      pg_SQLdb:
      - table config:
          - added fields 'scale_factor_BOARef' and 'scale_factor_errors_ac'
          - changed value of 'conversion_type_optical' to 'BOA_Ref'
      - updated __version__
      6fa974e0
  36. 11 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      second (not completely working) version of wrapper for atmospheric correction · d06523f9
      Daniel Scheffler authored
      algorithms.GEOPROCESSING:
      - revised imports
      algorithms.gms_object:
      - gms_object:
          - revised imports
          - added property 'dem': gms_object can now directly provide a corresponding SRTM DEM
          - arr: bandnames of property 'arr' are now in the form [B01, .., B8A,] and correspond to LayerBandsAssignment
          - added property 'ac_options': getter or options dictionary needed for atmospheric correction
          - from_disk(): added time zone to 'acquisition_date' datetime object
      - added class failed_GMS_object (based on earlier version from helper functions)
      algorithms.L1A_P.L1A_object:
      - revised imports
      - calc_TOARadRefTemp(): bugfix for wrong nodata value in out returned array in case of Sentinel-2
      - update_spec_vals_according_to_dtype: bugfix for not updating L1A_object.arr.nodata
      algorithms.L1B_P:
      - revised imports
      algorithms.L1C_P:
      - L1C_object:
          - get_lonlat_coord_array(): changed handling of return values
          - calc_acquisition_illumination_geometry(): changed handling of return values
      - AtmCorr:
          -  added attribute 'ac_input' containing input args/kwargs of atmospheric correction
          - data: now uses L1C_obj.arr.bandnames for lopping over bands
          - added property 'nodata'
          - added property 'tile_name'
          - added property 'band_spatial_sampling'
          - added property 'nodata'
          - added property 'nodata'
          - revised property 'metadata'
          - added _meta_get_spatial_samplings()
          - added _meta_get_solar_irradiance()
          - added _meta_get_viewing_zenith()
          - added _meta_get_viewing_azimuth()
          - added _meta_get_relative_viewing_azimuth()
          - revised run_atmospheric_correction()
          - revised join_results_to_inObjs()
      algorithms.METADATA
      - revised imports
      - added 'ScaleFactor' to meta_odict
      io.Input_reader:
      - fixed some bad type hints
      - SRF_reader(): moved path generator functionality to path_generator
      - added open_specific_file_within_archive() (moved)
      - added get_dem_by_extent(): new function for reading SRTM DEM data and warping to a given pixel grid
      io.Output_writer:
      - revised imports
      - fixed some bad type hints
      - added 'ScaleFactor' to enviHdr_keyOrder
      misc.__init__:
      - added __all__
      misc.database_tools:
      - fixed some bad type hints
      - get_overlapping_scenes_from_postgreSQLdb(): bugfix for wrong indexing
      misc.definition_dicts:
      - new module, consisting of earlier functions from helper_functions
      misc.exception_handler:
      - new module, consisting of earlier functions from helper_functions
      misc.helper_functions:
      - moved trace_unhandled_exceptions(), log_uncaught_exceptions() to misc.exception_handler
      - moved failed_GMS_object to gms_object
      - moved get_job_summary to process_controller
      - fixed some bad type hints
      - moved get_GMS_sensorcode(), get_mask_classdefinition(), get_outFillZeroSaturated(), get_mask_colormap() to misc.definition_dicts
      - moved open_specific_file_within_archive() to Input_reader
      misc.path_generator:
      - path_generator:
          - revised get_path_rawdata()
          - revised get_local_archive_path_baseN(): 'image_type' is not used anymore; removed deprecated warning
          - get_path_cloud_class_obj(): added cloud classificator files for Sentinel-2
          - added get_path_srf_file()
          - added get_path_snr_model()
          - added get_path_ac_options()
          - added get_path_ac_table()
      processing.multiproc:
      - revised MAP(): added new keyword 'flatten_ouput'
      processing.pipeline:
      - updated imports
      - revised L1C_map(): input represents one OR multiple L1B_objects belonging to the same scene_ID (atmospheric correction has to be applied to ALL subsystems of a scene at once)
      processing.process_controller:
      - changed some map calls due to new keyword  'flatten_ouput' of processing.multiproc.MAP
      - revised L1C_processing(): added grouping of L1B_objects by scene_ID
      - revised create_job_summary(): bugfix for emtpy input list of get_job_summary()
      - added get_job_summary(): moved from helper_functions
      config.Job:
      - added new attributes 'path_ac_options', 'path_ac_tables', 'path_SNR_models', 'path_dem_proc_srtm_90m', 'path_ECMWF_db'
      pgSGL_db table 'config':
      - added keys 'path_SNR_models', 'path_ac_options', 'path_dem_proc_srtm_90m', 'path_ECMWF_db',  'path_ac_tables'
      Fileserver:
      - added input datasets for atmospheric correction
      - updated __version__
      d06523f9
  37. 06 Jan, 2017 1 commit
    • Daniel Scheffler's avatar
      first (not yet working) version of wrapper for atmospheric correction · dd8f8334
      Daniel Scheffler authored
      algorithms.__init__:
      - added some imports
      algorithms.gms_object:
       - removed deprecated code
      algorithms.L1C_P:
      - removed deprecated code
      - added class 'AtmCorr': a wrapper class for atmospheric correction
      misc.database_tools:
      - fixed some broken type hints
      misc.helper_functions
      - fixed broken type hint
      - replaced deprecated function call
      processing.pipeline:
      - fixed some broken type hints
      - updated __version__
      dd8f8334
  38. 07 Dec, 2016 1 commit
    • Daniel Scheffler's avatar
      implemented "GMS_object" as parent object for all GMS objects; dissolved L0A_P... · 007965bf
      Daniel Scheffler authored
      implemented "GMS_object" as parent object for all GMS objects; dissolved L0A_P to config, and META; deleted L0B_P
      algorithms:
      - added new module 'gms_object', based on parts of L1A_object
          - GMS_object now provides the complete basic functionality of all GMS objects in later processing levels
      - L0A_P has been dissolved/moved to config and METADATA
      - L0B_P removed (deprecated)
      algorithms.L1A_P.L1A_object:
      - revised __init__() (L1A_object now inherits from GMS_object)
      - added import_rasterdata()
      - moved functions providing basic GMS functionality to GMS_object
      - refactored fill_from_disk() to from_disk()
      algorithms.L1B_P - L2C-P:
      - updated __init__() functions due to new object structure
      io.Output_writer:
      - Obj2ENVI: data_DB_updater now receives a dictionary including current state of all properties
      misc.database_tools.GMS_JOB:
      - added __repr__()
      - bugfix for using CFG.job.conn_database instead of self.conn
      - revised from_job_ID(): self.dataframe is now properly filled
      misc.helper_functions:
      - failed_GMS_object now inherits from GMS_object
      - get_GMS_sensorcode() now does not need a logger anymore
      processing.pipeline:
      - refactored L0A_L1A_map to L1A_map and L0B_L1A_map_1 to L1A_map_1
      - revised L1A_map and L1A_map_1 according to new structure of L1A_object
      processing.process_controller:
      - added attribute '_DB_job_record'
      - added property 'DB_job_record'
      - removed get_data_list() (deprecated)
      - stop(): added docstring
      - L1A_processing(): edited docstring and added logger output; changed reduce call (!)
      - L1B_processing(): edited docstring and added logger output
      - L1C_processing(): edited docstring and added logger output; changed reduce call (!)
      - L2A_processing(): edited docstring and added logger output
      - L2B_processing(): edited docstring and added logger output; changed reduce call (!)
      - L2C_processing(): edited docstring and added logger output
      config:
      - Job: added attribute 'DB_job_record'
      - Usecase:
          - added attributes '_job' and 'data_list'
          - moved get_usecase_coord_grid() from top level of module here
          - added get_entity_IDs_within_AOI() from L0A_P
          - added get_data_list_of_current_jobID() from L0A_P
      - updated __version__
      007965bf