Updated minimal versions of dependencies. Added requirements_pip.txt. Updated docker CI runner tag.

requirements.txt

-py_tools_ds>=0.9.1
-geoarray>=0.6.12
-arosics>0.6.2
+py_tools_ds>=0.9.3
+geoarray>=0.6.16
+arosics>0.6.6
 git+https://gitext.gfz-potsdam.de/EnMAP/sicor.git
 matplotlib
 numpy

requirements_pip.txt

+scipy
+ephem
+pyorbital
+dill
+pytz
+numba
+spectral
+geopandas
+iso8601
+pyinstrument
+geoalchemy2
+sqlalchemy
+six

setup.py

@@ -14,14 +14,14 @@ with open('HISTORY.rst') as history_file:
 requirements = [
     'matplotlib', 'numpy', 'scikit-learn', 'scipy', 'gdal', 'pyproj', 'shapely', 'ephem', 'pyorbital', 'dill', 'pytz',
     'pandas', 'numba', 'spectral>=0.16', 'geopandas', 'iso8601', 'pyinstrument', 'geoalchemy2', 'sqlalchemy',
-    'psycopg2', 'py_tools_ds>=0.9.1', 'geoarray>=0.6.12', 'arosics>0.6.2', 'six'
+    'psycopg2', 'py_tools_ds>=0.9.3', 'geoarray>=0.6.16', 'arosics>0.6.6', 'six'
     # spectral<0.16  has some problems with writing signed integer 8bit data
     # fmask # conda install -c conda-forge python-fmask
     # 'pyhdf', # conda install --yes -c conda-forge pyhdf
     # 'sicor', # pip install git+https://gitext.gfz-potsdam.de/hollstei/sicor.git
 ]
 setup_requirements = []  # TODO(danschef): put setup requirements (distutils extensions, etc.) here
-test_requirements = requirements + ['coverage', 'nose', 'nose-htmloutput', 'rednose']
+test_requirements = requirements + ['coverage', 'nose', 'nose2', 'nose-htmloutput', 'rednose']
 
 setup(
     name='gms_preprocessing',

tests/CI_docker/build_testsuite_image.sh

@@ -2,7 +2,7 @@
 
 context_dir="./context"
 dockerfile="gms_preprocessing_ci.docker"
-tag="gms_preprocessing_ci:0.8.4"
+tag="gms_preprocessing_ci:0.9.1"
 gitlab_runner="gms_preprocessing_gitlab_CI_runner"
 
 # get sicor project # TODO move this to setup.py as soon as package is public

tests/CI_docker/context/gms_preprocessing_ci.docker

@@ -17,8 +17,8 @@ RUN /bin/bash -i -c "source /root/anaconda3/bin/activate ; \
                                        pykrige glymur pygrib pyproj cachetools pyhdf ephem python-fmask scipy ; \
     conda install --yes -c conda-forge 'icu=58.*' lxml ; \
     pip install pandas geopandas dicttoxml jsmin cerberus pyprind pint iso8601 tqdm mpld3 sphinx-argparse dill pytz \
-                spectral>0.16 psycopg2 pyorbital pyinstrument geoalchemy2 sqlalchemy py_tools_ds>=0.9.1 \
-                geoarray>=0.6.12 arosics>=0.6.2 flake8 pycodestyle pylint pydocstyle nose nose2 nose-htmloutput \
+                spectral>0.16 psycopg2 pyorbital pyinstrument geoalchemy2 sqlalchemy py_tools_ds>=0.9.3 \
+                geoarray>=0.6.16 arosics>=0.6.6 flake8 pycodestyle pylint pydocstyle nose nose2 nose-htmloutput \
                 coverage rednose six"   # must include all the requirements needed to build the docs!
 
 # copy some needed stuff to /root