Added setup, test, doc, lint and dev requirements. First working release on...

Added setup, test, doc, lint and dev requirements. First working release on PyPI. Updated version info.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

HISTORY.rst

@@ -2,6 +2,13 @@
 History
 =======
 
+0.18.9 (2020-10-13)
+-------------------
+
+* Added setup, test, doc, lint and dev requirements.
+* First working release on PyPI.
+
+
 0.18.8 (2020-10-13)
 -------------------
 
@@ -17,7 +24,8 @@ History
 * Replaced deprecated 'source activate' by 'conda activate'.
 * Removed ecmwf-api-client installation as this is now included in SICOR.
 * Pinned scipy to 1.1.0 in environment_gms_preprocessing.yml to make CI work for now.
-* Revised docker container setup files.
+* Revised docker container
+setup files.
 
 
 0.18.6 (2020-10-12)

MANIFEST.in

@@ -3,7 +3,11 @@ include CONTRIBUTING.rst
 include HISTORY.rst
 include LICENSE
 include README.rst
+exclude travis_pypi_setup.py
 
+recursive-exclude .github *
+recursive-exclude benchmarks *
+recursive-exclude examples *
 recursive-exclude tests *
 recursive-exclude * __pycache__
 recursive-exclude * *.py[co]

gms_preprocessing/version.py

@@ -24,5 +24,5 @@
 # You should have received a copy of the GNU Lesser General Public License along
 # with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-__version__ = '0.18.8'
-__versionalias__ = '20201013.02'
+__version__ = '0.18.9'
+__versionalias__ = '20201013.03'

setup.py

@@ -39,7 +39,7 @@ version = {}
 with open("gms_preprocessing/version.py", encoding='utf-8') as version_file:
     exec(version_file.read(), version)
 
-requirements = [
+req = [
     'arosics>=1.0.0',
     'cerberus',
     'dill',
@@ -79,8 +79,16 @@ requirements = [
     # fmask # conda install -c conda-forge python-fmask
     # 'pyhdf', # conda install --yes -c conda-forge pyhdf
 ]
-setup_requirements = []  # TODO(danschef): put setup requirements (distutils extensions, etc.) here
-test_requirements = requirements + ['coverage', 'nose', 'nose2', 'nose-htmloutput', 'rednose']
+
+req_setup = ['setuptools-git']  # needed for package_data version controlled by GIT
+
+req_test = ['coverage', 'nose', 'nose2', 'nose-htmloutput', 'rednose']
+
+req_doc = ['sphinx-argparse', 'sphinx_rtd_theme']
+
+req_lint = ['flake8', 'pycodestyle', 'pydocstyle']
+
+req_dev = req_setup + req_test + req_doc + req_lint
 
 setup(
     author="Daniel Scheffler",
@@ -97,19 +105,24 @@ setup(
         'Programming Language :: Python :: 3.9',
     ],
     description="GeoMultiSens - Scalable Multi-Sensor Analysis of Remote Sensing Data",
+    extras_require={
+        "doc": req_doc,
+        "test": req_test,
+        "lint": req_lint,
+        "dev": req_dev
+    },
     keywords='gms_preprocessing',
     include_package_data=True,
-    install_requires=requirements,
+    install_requires=req,
     license="GPL-3.0-or-later",
     long_description=readme,
     name='gms_preprocessing',
-    # package_data={"gms_preprocessing": ["database/**/**/**/*"]},
-    package_data={"database": ["gms_preprocessing/database/*"]},
+    package_data={"gms_preprocessing": ["database/**/**/*"]},
     package_dir={'gms_preprocessing': 'gms_preprocessing'},
-    packages=find_packages(exclude=['tests*']),  # searches for packages with an __init__.py and returns a list
+    packages=find_packages(exclude=['.github', 'benchmarks', 'docs', 'examples', 'tests*']),
     scripts=["bin/run_gms.py", "bin/run_gms.sh"],
     test_suite='tests',
-    tests_require=test_requirements,
+    tests_require=req_test,
     url='https://gitext.gfz-potsdam.de/geomultisens/gms_preprocessing',
     version=version['__version__'],
     zip_safe=False