Merge branch 'feature/ind06' into 'master'

Completed module and tools that create industrial cells around input points

See merge request !16

GDE_TOOLS_create_industrial_cells.py

@@ -1222,6 +1222,7 @@ def generate_country_industrial_cells(
     in_crs="EPSG:4326",
     consistency_tol_dist=0.05,
     consistency_tol_area=0.05,
+    verbose=False,
 ):
     """This function reads the input aggregated exposure model of the country (location defined
     by aggr_model_pathname and country), identifies the unique points present in this input
@@ -1316,6 +1317,8 @@ def generate_country_industrial_cells(
                                       range, which is calculated as ([max-min]/mean) of all
                                       cells. Default: 0.05. Only needed if consistency_checks is
                                       True.
+        verbose (bool): if True, print statements will be executed to describe progress in the
+                        calculations. Default = False.
 
     Returns:
         cells_adj_bound_gdf (GeoDataFrame): GeoPandas GeoDataFrame with the cells defined around
@@ -1394,6 +1397,8 @@ def generate_country_industrial_cells(
     # Retrieve unique points in the exposure file, determined with a specific precision
     # (points_gdf is a GeoPandas GeoDataFrame, ids_aggr is an array of strings with length
     # equal to the number of rows of aggr_mod_df):
+    if verbose:
+        print("   Building cells from input points...")
     points_gdf, ids_aggr = retrieve_unique_points(
         aggr_mod_df, col_lon, col_lat, id_str, precision=precision_points, in_crs=in_crs
     )
@@ -1423,6 +1428,8 @@ def generate_country_industrial_cells(
     # Adjust all the coordinates of the corners of the cells (coords_dict) by taking the
     # average value of all instances of that coordinate that "should be the same", as identified
     # in coords_uq:
+    if verbose:
+        print("   Adjusting cells' geometries...")
     coords_dict_adj = adjust_coords(coords_dict, coords_uq)  # coords_dict_adj is a dictionary
 
     # Generate final output with adjusted cell geometries (cells_adj_gdf is a
@@ -1436,7 +1443,11 @@ def generate_country_industrial_cells(
         big_dist_diff = "Not_Checked"
         big_area_diff = "Not_Checked"
     else:
+        if verbose:
+            print("   Running consistency checks...")
         # Consistency check 1: the output geometries should not overlap
+        if verbose:
+            print("      Consistency check #1 of 4...")
         num_overlaps = 999  # Initialise variable for the while loop to run at least once
         while num_overlaps > 0:
             intsect_gdf = overlap_by_full_geom_intersection(cells_adj_gdf, "id_1", "id_2")
@@ -1461,6 +1472,8 @@ def generate_country_industrial_cells(
                 overlap_found = "False"
 
         # Consistency check 2:
+        if verbose:
+            print("      Consistency check #2 of 4...")
         gaps_found = True  # Initialise variable for the while loop to run at least once
         while gaps_found:
             # Expand the cells by 25% of their dimensions in all directions:
@@ -1499,6 +1512,8 @@ def generate_country_industrial_cells(
             gap_found = str(gaps_found)
 
         # Consistency check 3: maximum distance between original points and final centroids:
+        if verbose:
+            print("      Consistency check #3 of 4...")
         max_dist_centr = get_distance_centroids(cells_adj_gdf, col_lon, col_lat)
         # Compare the maximum distance against the tolerance:
         if max_dist_centr > min(width_EW, width_NS) * consistency_tol_dist:
@@ -1507,6 +1522,8 @@ def generate_country_industrial_cells(
             big_dist_diff = "False"
 
         # Consistency check 4: stability/variability of area of resulting cells:
+        if verbose:
+            print("      Consistency check #4 of 4...")
         rel_area_range = get_relative_area_range(cells_gdf)
         # Compare the relative area range ([max-min]/mean) against the tolerance:
         if rel_area_range > consistency_tol_area:
@@ -1515,6 +1532,8 @@ def generate_country_industrial_cells(
             big_area_diff = "False"
 
     # Intersect cells with admnistrative boundary of country:
+    if verbose:
+        print("   Intersecting cells with admnistrative boundary of country...")
     cells_adj_bound_gdf = gpd.overlay(cells_adj_gdf, bounds_gdf, how="intersection")
     # Eliminate columns that are not useful:
     if "ID_0" in cells_adj_bound_gdf.columns:
@@ -1536,6 +1555,9 @@ def generate_country_industrial_cells(
         cells_adj_bound_gdf["lat_s"].values[row] = geometry_row.bounds[1]
         cells_adj_bound_gdf["lat_n"].values[row] = geometry_row.bounds[3]
 
+    if verbose:
+        print("   generate_country_industrial_cells has finished generating the cells")
+
     return (
         cells_adj_bound_gdf,
         aggr_mod_df,
@@ -1545,3 +1567,147 @@ def generate_country_industrial_cells(
         big_area_diff,
         country_id,
     )
+
+
+def export_modified_aggregated_model_file(aggr_mod_df, out_pathname, out_filename, separ=","):
+    """This function writes the aggr_mod_df DataFrame to a CSV file with name out_filename,
+    under the path out_pathname. If the file already exists, it will overwrite it. If the path
+    does not exist, it will create it.
+
+    Args:
+        aggr_mod_df (DataFrame): Pandas DataFrame to be exported.
+        out_pathname (str): Path to where the output CSV will be written.
+        out_filename (str): File name of the output CSV file.
+        separ: Separator to use in the CSV file (default=',').
+    """
+
+    # Create out_pathname if it does not exist:
+    if not os.path.exists(out_pathname):
+        os.makedirs(out_pathname)
+
+    aggr_mod_df.to_csv(os.path.join(out_pathname, out_filename), sep=separ)
+
+
+def export_cells_to_geodatafile(
+    country_name, country_id, cells_gdf, out_pathname, out_filename, out_driver="ESRI Shapefile"
+):
+    """This function creates a geospatial data file of format given by out_driver, with the IDs
+    and geometries of cells_gdf. Additional fields are written with the country name and ID. If
+    the file already exists, it will overwrite it. If the path does not exist, it will create
+    it.
+
+    Args:
+        country_name (str): Name of country (as in the files of the aggregated model).
+        country_id (int): ID of the country as per the geospatial data files of the input
+                          aggregated model.
+        cells_gdf (GeoDataFrame): GeoPandas GeoDataFrame with the cells geometry. This function
+                                  assumes that it contains at least the following columns:
+                                   - id: ID of the cell, given by id_str and an incremental
+                                         integer.
+                                   - geometry: (Shapely) polygons of the output cells.
+        out_pathname (str): Path to where the geospatial data file will be written.
+        out_filename (str): File name of the geospatial data file.
+        out_driver (str): "ESRI Shapefile", "GeoJSON", "GPKG", etc. Format of the output
+                          geospatial data file.
+    """
+
+    # Check that in_gdf has the needed columns and terminate otherwise:
+    if ("id" not in cells_gdf.columns) or ("geometry" not in cells_gdf.columns):
+        print("ERROR!! One or more of id, geometry missing as columns of cells_gdf")
+        return
+
+    # Create out_pathname if it does not exist:
+    if not os.path.exists(out_pathname):
+        os.makedirs(out_pathname)
+
+    # Start a new GeoDataFrame with the desired columns/features of cells_gdf:
+    shp_gdf = gpd.GeoDataFrame({}, geometry=cells_gdf["geometry"])
+    shp_gdf["ID_99"] = deepcopy(cells_gdf["id"])
+    shp_gdf["NAME_99"] = deepcopy(cells_gdf["id"])
+
+    # Add values of admin unit level 0:
+    id_0 = np.array([country_id for i in range(shp_gdf.shape[0])])
+    name_0 = np.array([country_name for i in range(shp_gdf.shape[0])])
+    shp_gdf["ID_0"] = id_0
+    shp_gdf["NAME_0"] = name_0
+
+    # Write to ShapeFile or other format (as per out_driver):
+    shp_gdf.to_file(os.path.join(out_pathname, out_filename), driver=out_driver)
+
+
+def which_countries_on_a_grid(
+    metadata_filepath,
+    sheet_name="IND",
+    col_name="Variables",
+    var_name="Resolution",
+    target="30 arc seconds",
+    export=False,
+    out_pathname="",
+    out_filename="",
+):
+    """This function retrieves the list of countries for which the industrial exposure is
+    defined on a 30-arcsec grid in the SERA exposure model. This information is provided in the
+    EFEHR repository within an Excel spreadsheet called
+    "European_Exposure_Model_Data_Assumptions.xlsx". The default values of all input parameters
+    refer to the structure of this file.
+
+    Args:
+        metadata_filepath (str): Full path to the source metadata file, including file name and
+                                 extension. It needs to be an Excel spreadsheet (.xls or .xlsx).
+        sheet_name (str): Name of the sheet of metadata_filepath to read. Default: "IND".
+        col_name (str): Name of the column of sheet_name that contains the parameter names.
+                        Default: "Variables".
+        var_name (str): Name of the parameter to read. Default: "Resolution".
+        target (str): Target value of var_name (i.e. the code will seek for cases in which the
+                      value of var_name is target. Default: "30 arc seconds".
+        export (bool): If True, the resulting list of countries will be exported to a CSV file
+                       under the path out_pathname and the file name out_filename.
+                       Default: False.
+        out_pathname (str): Path where to export the output CSV to. Only needed if export is
+                            True. Default: "".
+        out_filename (str): Name of the file where to write the list of countries. Only needed
+                            if export is True. Default: "".
+
+    Returns:
+        countries (list of str): List of countries for which the var_name takes the value given
+                                 by target (the countries for which the industrial exposure is
+                                 defined on a 30-arcsec grid in the SERA exposure model.
+    """
+
+    # Check metadata_filepath exists and points at an Excel spreadsheet:
+    if not os.path.isfile(metadata_filepath):
+        print("ERROR in which_countries_on_a_grid: input file not found")
+        return []
+    if "xls" not in metadata_filepath.split(".")[-1]:
+        print("ERROR in which_countries_on_a_grid: input file is not an Excel spreadsheet")
+        return []
+
+    # Read the SERA metadata file:
+    metadata = pd.read_excel(metadata_filepath, sheet_name=sheet_name)
+
+    # Identify the row in which the variable var_name is given:
+    which_row = np.where(metadata[col_name].values == var_name)[0]
+
+    if len(which_row) != 1:  # This should not occur
+        print("ERROR READING %s: ROW NOT FOUND." % (metadata_filepath))
+        return []
+
+    # Retrieve the row in which the variable var_name is given:
+    whole_row = metadata.iloc[which_row[0], :]
+    # Columns in which var_name takes the value target:
+    which_cols = np.where(whole_row == target)[0]
+    # The names of those columns are the countries for which var_name takes the value target:
+    countries = list(whole_row.index[which_cols])
+
+    # Write a csv file with the list of countries:
+    if export:
+        # Create out_pathname if it does not exist:
+        if not os.path.exists(out_pathname):
+            os.makedirs(out_pathname)
+        # Write to file:
+        out_filepath = os.path.join(out_pathname, out_filename)
+        f = open(out_filepath, "w")
+        f.write(",".join(countries))
+        f.close()
+
+    return countries

GDE_config_file_TEMPLATE.ini

@@ -23,6 +23,8 @@ sera_models_path = WRITE_PATH
 sera_models_OQ_path = WRITE_PATH
 # Path to the shapefiles of admin units used in SERA:
 sera_boundaries_path = WRITE_PATH
+# File type containing the boundaries ("shp"=Shapefile, "gpkg"=Geopackage):
+boundaries_type = shp
 # Path to the GHS layer:
 ghs_path = WRITE_PATH
 # Path to the GPW data:
@@ -274,3 +276,36 @@ occupancy_cases = Res, Com, Ind, Oth
 decimal_places_gral = 4
 decimal_places_costs = 0 
 
+[SERA_creating_industrial_cells]
+# Countries to process (if many, separate with comma and space):
+countries = Albania, Austria, Belgium, Bosnia_and_Herzegovina, Bulgaria, Croatia, Cyprus, Czechia, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Lithuania, Luxembourg, Malta, Moldova, Montenegro, Netherlands, North_Macedonia, Norway, Poland, Portugal, Romania, Serbia, Slovakia, Slovenia, Spain, Sweden, Switzerland, United_Kingdom
+# Names of the columns in the SERA model that contain longitudes and latitudes:
+col_lon = LONGITUDE
+col_lat = LATITUDE
+# Width of the cell in the East-West direction, in arcseconds, >0:
+width_EW = 30
+# Width of the cell in the North-south direction, in arcseconds, >0:
+width_NS = 30
+# First part of the string used to generate IDs of the inidividual points (e.g. "IND").
+# Do not include country's ISO2 code:
+id_str = IND
+# Number of decimal places to be used to determine unique points present in the aggregated
+# exposure model (4 is a reasonable value):
+precision_points = 4
+# Run consistency checks (True) or not (False):
+consistency_checks = True
+# Autoadjust potential leftover overlaps and gaps (True) or not (False):
+autoadjust = True
+# Print statemens of progress while running:
+verbose = False
+# CRS of the SERA files:
+in_crs = EPSG:4326
+# Tolerance to assess how large the maximum distance between the original points and the
+# centroids of the generated cells is with respect to the width of the cells. Only needed
+# if consistency_checks is True (e.g. 0.05 implies a 5% of the width as tolerance):
+consistency_tol_dist = 0.05
+# Tolerance to assess how large the variability of the area of the generated cells is. Only
+# needed if consistency_checks is True:
+consistency_tol_area = 0.05
+# File type to export the created cells to ("shp"=Shapefile, "gpkg"=Geopackage):
+export_type = shp

SERA_creating_industrial_cells.py

+"""
+Copyright (C) 2021
+  Helmholtz-Zentrum Potsdam Deutsches GeoForschungsZentrum GFZ
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU Affero General Public License as
+published by the Free Software Foundation, either version 3 of the
+License, or (at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU Affero General Public License for more details.
+
+You should have received a copy of the GNU Affero General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+
+Global Dynamic Exposure Model
+Helmholtz Centre Potsdam
+GFZ German Research Centre for Geosciences
+Section 2.6: Seismic Hazard and Risk Dynamics
+
+SERA_creating_industrial_cells
+==============================
+This code is used to handle the fact that industrial exposure may be defined in 30-arcsec cells
+instead of administrative units in the SERA exposure model. The SERA model only provides the
+centroids of those cells with a certain decimal precision. This code makes use of the tools
+defined in GDE_TOOLS_create_industrial_cells.py, which create cells around the points given as
+input and export these cells to a geodata file. The country/ies to process is defined in the
+configuration file. The cells' North-South and East-West widths are given as input too.
+"""
+
+import sys
+import os
+import GDE_TOOLS_create_industrial_cells as gdet_ind
+import GDE_TOOLS_general as gdet_gral
+import GDE_TOOLS_read_config_file as gdet_conf
+import datetime
+
+
+def run(config_dict):
+    ####################################################
+    # READ CONFIGURATION PARAMETERS
+    ####################################################
+    print("Processing configuration parameters...")
+    # Path for output:
+    out_path = config_dict["File Paths"]["out_path"]
+    # SERA models path:
+    sera_models_path = config_dict["File Paths"]["sera_models_path"]
+    # SERA boundaries shapefiles path:
+    sera_shp_path = config_dict["File Paths"]["sera_boundaries_path"]
+    bound_type = config_dict["File Paths"]["boundaries_type"]
+    # Countries to process:
+    countries = config_dict["SERA_creating_industrial_cells"]["countries"].split(", ")
+    # Name of columns with longitude and latitude in the SERA model:
+    col_lon = config_dict["SERA_creating_industrial_cells"]["col_lon"]
+    col_lat = config_dict["SERA_creating_industrial_cells"]["col_lat"]
+    # Widths of the cells to be generated:
+    width_EW = float(config_dict["SERA_creating_industrial_cells"]["width_EW"])
+    width_NS = float(config_dict["SERA_creating_industrial_cells"]["width_NS"])
+    # Input is given in arcseconds, transform to degrees:
+    width_EW = width_EW / (60.0 * 60.0)
+    width_NS = width_NS / (60.0 * 60.0)
+    # First part of the string used to generate IDs of the individual points (e.g. "IND"):
+    id_str = config_dict["SERA_creating_industrial_cells"]["id_str"]
+    # Number of decimal places to be used to determine unique points in the aggregated model:
+    precision_points = int(config_dict["SERA_creating_industrial_cells"]["precision_points"])
+    # Run consistency checks (True) or not (False):
+    consistency_checks_str = config_dict["SERA_creating_industrial_cells"]["consistency_checks"]
+    if consistency_checks_str.lower() == "true":
+        consist_checks = True
+    elif consistency_checks_str.lower() == "false":
+        consist_checks = False
+    else:
+        print(
+            "ERROR!! IT SHOULD NOT GET TO THIS POINT, "
+            "AS THE PARAMETER IS CHECKED IN THE CONFIG FILE CHECKS"
+        )
+    # Autoadjust potential leftover overlaps and gaps (True) or not (False):
+    autoadjust_str = config_dict["SERA_creating_industrial_cells"]["autoadjust"]
+    if autoadjust_str.lower() == "true":
+        autoadjust = True
+    elif autoadjust_str.lower() == "false":
+        autoadjust = False
+    else:
+        print(
+            "ERROR!! IT SHOULD NOT GET TO THIS POINT, "
+            "AS THE PARAMETER IS CHECKED IN THE CONFIG FILE CHECKS"
+        )
+    # Print statemens of progress while running:
+    verbose_str = config_dict["SERA_creating_industrial_cells"]["verbose"]
+    if verbose_str.lower() == "true":
+        verbose = True
+    elif verbose_str.lower() == "false":
+        verbose = False
+    else:
+        print(
+            "ERROR!! IT SHOULD NOT GET TO THIS POINT, "
+            "AS THE PARAMETER IS CHECKED IN THE CONFIG FILE CHECKS"
+        )
+    # Tolerances for the consistency checks:
+    if consist_checks:
+        # Tolerance for maximum distance between the original points and the centroids of the
+        # generated cells:
+        tol_dist = float(config_dict["SERA_creating_industrial_cells"]["consistency_tol_dist"])
+        # Tolerance for variability of the area of the generated cells:
+        tol_area = float(config_dict["SERA_creating_industrial_cells"]["consistency_tol_area"])
+    else:  # Dummy values, they will not be used
+        tol_dist = 0.05
+        tol_area = 0.05
+    # CRS of the SERA files:
+    in_crs = config_dict["SERA_creating_industrial_cells"]["in_crs"]
+    # File type to export the created cells to (e.g. "shp"=Shapefile, "gpkg"=Geopackage):
+    export_type = config_dict["SERA_creating_industrial_cells"]["export_type"]
+    ####################################################
+    # START
+    ####################################################
+    # Auxiliary dictionary definining the precision to use to convert coordinates into strings:
+    dec_precision_EW = int("{:E}".format(width_EW).split("-")[1])
+    dec_precision_NS = int("{:E}".format(width_NS).split("-")[1])
+    precision_cells = {}
+    precision_cells["lon_w"] = "{:.%sf}" % (dec_precision_EW)
+    precision_cells["lat_s"] = "{:.%sf}" % (dec_precision_NS)
+    precision_cells["lon_e"] = "{:.%sf}" % (dec_precision_EW)
+    precision_cells["lat_n"] = "{:.%sf}" % (dec_precision_NS)
+    # Run country by country
+    if consist_checks:
+        log = ["country,overlap_found,gap_found,big_distance_found,big_area_variability_found"]
+    processing_times = ["country,processing_time"]
+    for k, country_name in enumerate(countries):
+        start_time = datetime.datetime.now()
+        print("\n")
+        print(
+            "Working on %s, country %s of %s\n"
+            % (country_name, str(k + 1), str(len(countries)))
+        )
+
+        # Generate cells for this country:
+        country_iso2 = gdet_gral.get_ISO2_code_for_country(country_name)
+        id_str_country = "%s_%s" % (country_iso2, id_str)
+        results = gdet_ind.generate_country_industrial_cells(
+            country_name,
+            col_lon,
+            col_lat,
+            width_EW,
+            width_NS,
+            id_str_country,
+            precision_points,
+            precision_cells,
+            sera_models_path,
+            sera_shp_path,
+            boundaries_type=bound_type,
+            consistency_checks=consist_checks,
+            autoadjust_overlap_gap=autoadjust,
+            in_crs=in_crs,
+            consistency_tol_dist=tol_dist,
+            consistency_tol_area=tol_area,
+            verbose=verbose,
+        )
+        (
+            cells,
+            aggr_model,
+            overlap_found,
+            gap_found,
+            big_dist_diff,
+            big_area_diff,
+            country_id,
+        ) = results
+
+        # Print to screen and a log file the results of the consistency check if requested:
+        if consist_checks:
+            print("\n")
+            print("   Results for consistency checks:")
+            if overlap_found == "True":
+                overlap_str = "Problem found with cells overlapping. ERROR."
+            else:
+                overlap_str = "Cells do not overlap. OK."
+            if gap_found == "True":
+                gap_str = "Problem found with gaps in between cells. ERROR."
+            else:
+                gap_str = "Cells do not have gaps in between. OK."
+            if big_dist_diff == "True":
+                big_dist_str = "Distances between centroids and points too large. ERROR."
+            else:
+                big_dist_str = "Distances between centroids and points are OK."
+            if big_area_diff == "True":
+                big_area_str = "Variability of resulting cell areas too large. ERROR."
+            else:
+                big_area_str = "Variability of resulting cell areas is OK."
+            print("      %s" % (overlap_str))
+            print("      %s" % (gap_str))
+            print("      %s" % (big_dist_str))
+            print("      %s" % (big_area_str))
+            out_str = [country_name, overlap_found, gap_found, big_dist_diff, big_area_diff]
+            log.append(",".join(out_str))
+
+        # Export SERA aggregated exposure model with additional columns referring to cells:
+        if verbose:
+            print("\n")
+            print("   Updating aggregated exposure file...")
+        aggr_filename = "Exposure_Ind_%s.csv" % (country_name)
+        gdet_ind.export_modified_aggregated_model_file(
+            aggr_model, os.path.join(out_path, "Ind_Cells"), aggr_filename, separ=","
+        )
+
+        # Export geodata file of cells:
+        if verbose:
+            print("\n")
+            print("   Exporting cells geometry to file...")
+        cells_filename = "Adm99_%s.%s" % (country_name, export_type)
+        gdet_ind.export_cells_to_geodatafile(
+            country_name, country_id, cells, os.path.join(out_path, "Ind_Cells"), cells_filename
+        )
+
+        # Time it took to process this country:
+        end_time = datetime.datetime.now()
+        duration = (end_time - start_time).total_seconds()
+        processing_times.append("%s,%s" % (country_name, str(duration)))
+
+    # Write output log of consistency checks:
+    if consist_checks:
+        gdet_gral.write_log_file(
+            log, os.path.join(out_path, "Ind_Cells", "log_consistency_checks.csv")
+        )
+
+    # Write output log of processing times:
+    gdet_gral.write_log_file(
+        processing_times, os.path.join(out_path, "Ind_Cells", "log_processing_times.csv")
+    )
+
+    print("\n")
+    print("Done!")
+
+
+if __name__ == "__main__":
+    # This code needs to be run from the command line as python3 namefile.py configfile.ini.
+    # sys.argv retrieves all the commands entered in the command line; position [0] is this
+    # code, position [1] will be the config file name.
+    config_filename = sys.argv[1]
+    section_names_to_validate = ["File Paths", os.path.basename(__file__).split(".")[0]]
+    config_dict = gdet_conf.read_config_parameters(
+        os.path.join(os.getcwd(), config_filename), section_names_to_validate
+    )
+    run(config_dict)

docs/02_Execution.md

@@ -14,17 +14,18 @@ The scripts are run from the command line as:
 
 The order in which the scripts in the present repository need to be run to produce the GDE model for a region of interest is:
 
-1. Run `OBM_assign_cell_ids_and_adm_ids_to_footprints.py`
-2. Run `SERA_create_HDF5_metadata.py`.
-3. Run `SERA_mapping_admin_units_to_cells.py`
-4. Run `SERA_mapping_admin_units_to_cells_add_GHS.py` (if GHS criterion desired)
-5. Run `SERA_mapping_admin_units_to_cells_add_GPW.py` (if GPW criterion desired)
-6. Run `SERA_mapping_admin_units_to_cells_add_Sat.py` (if Sat or Sat_mod criterion desired)
-7. Run `SERA_distributing_exposure_to_cells.py` with the desired distribution method.
-8. If the OpenQuake input files for the SERA model distributed onto a grid are desired (i.e. not GDE, just SERA), run `SERA_create_OQ_input_files.py` with the desired distribution method.
+1. If the country/ies of interest have their industrial exposure defined on a 30-arcsec grid, run `SERA_creating_industrial_cells.py`
+2. Run `OBM_assign_cell_ids_and_adm_ids_to_footprints.py`
+3. Run `SERA_create_HDF5_metadata.py`
+4. Run `SERA_mapping_admin_units_to_cells.py`
+5. Run `SERA_mapping_admin_units_to_cells_add_GHS.py` (if GHS criterion desired)
+6. Run `SERA_mapping_admin_units_to_cells_add_GPW.py` (if GPW criterion desired)
+7. Run `SERA_mapping_admin_units_to_cells_add_Sat.py` (if Sat or Sat_mod criterion desired)