CI now uses Mambaforge. Revised test_sensormapgeo_install CI job.

Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

.gitlab-ci.yml

@@ -10,7 +10,7 @@ stages:
 test_sensormapgeo:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
 
     - pip install 'pyresample<1.17.0'  # https://github.com/pytroll/pyresample/issues/325
 
@@ -18,9 +18,8 @@ test_sensormapgeo:
     - make nosetests
 
     # create the docs
-    - pip install sphinx_rtd_theme  # Read-the-docs theme for SPHINX documentation
-    - pip install sphinx-autodoc-typehints
     - make docs
+
   artifacts:
     paths:
     - htmlcov/
@@ -33,7 +32,7 @@ test_sensormapgeo:
 test_styles:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - make lint
   artifacts:
     paths:
@@ -46,7 +45,7 @@ test_styles:
 test_urls:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - pip install -U urlchecker
     - make urlcheck
   when: always
@@ -55,19 +54,12 @@ test_urls:
 test_sensormapgeo_install:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate
-
-    # update conda and python
-    - conda update -n base -c conda-forge conda
-    # - conda update -c conda-forge python
-
-    # create sensormapgeo environment
-    - conda create -y -q --name sensormapgeo_testinstall python=3
-    - conda activate sensormapgeo_testinstall
+    - source /root/mambaforge/bin/activate
+    - mamba update -n base -c conda-forge --all
 
-    # resolve some requirements with conda
-    # - conda config --set channel_priority strict  # otherwise gdal or libgdal may be installed from defaults channel
-    - conda install --yes -q -c conda-forge numpy gdal 'pyresample<1.17.0' pyqt scikit-image pyproj lxml geopandas ipython _openmp_mutex=*=*llvm*
+    # create sensormapgeo environment from environment_sensormapgeo.yml
+    - mamba env create --name sensormapgeo_test -f tests/CI_docker/context/environment_sensormapgeo.yml
+    - conda activate sensormapgeo_test
 
     # run installer
     - python setup.py install
@@ -121,7 +113,7 @@ deploy_pypi:
   dependencies:
     - test_sensormapgeo
   script:
-    - source /root/miniconda3/bin/activate ci_env
+    - source /root/mambaforge/bin/activate ci_env
     - pip install -U twine
     - python setup.py sdist
     - twine upload dist/*  # requires creds as environment variables

HISTORY.rst

@@ -2,6 +2,10 @@
 History
 =======
 
+0.4.9 (coming soon)
+-------------------
+
+* CI now uses Mambaforge. Revised test_sensormapgeo_install CI job.
 
 
 0.4.8 (2020-02-08)

tests/CI_docker/context/environment_sensormapgeo.yml

@@ -26,4 +26,6 @@ dependencies:
     - pylint
     - rednose
     - sphinx-argparse
+    - sphinx-autodoc-typehints
+    - sphinx_rtd_theme
     - urlchecker

tests/CI_docker/context/sensormapgeo_ci.docker

-FROM ci_base_centos:0.1
+FROM ci_base_centos:0.2
 
 # copy some needed stuff to /root
 COPY *.yml /root/
 
 # update the ci_env environment (that already contains all packages installed via 'docker_pyenvs' repo)
-# NOTE: We update conda and Python to avoid version incompatibilities.
 RUN /bin/bash -i -c "\
-    source /root/miniconda3/bin/activate; \
-    conda update -n base -c conda-forge conda ; \
+    source /root/mambaforge/bin/activate; \
+    mamba update -n base -c conda-forge --all ; \
     conda activate ci_env; \
-    conda env update -n ci_env -f /root/environment_sensormapgeo.yml"
+    mamba env update -n ci_env -f /root/environment_sensormapgeo.yml"