[0KRunning with gitlab-runner 13.5.0 (ece86343)
[0;m[0K on enpt_enmapboxapp_ci_runner__v0.8.5__mefe2 6ALFyLDv
[0;msection_start:1724838926:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m
[0;m[0KUsing Docker executor with image ds__enpt_enmapboxapp_ci:0.8.5 ...
[0;m[0KUsing docker image sha256:103183b07fa974836af374afd316b17058322a3a4b5466a2456d4cede1c85b82 for ds__enpt_enmapboxapp_ci:0.8.5 ...
[0;msection_end:1724838933:prepare_executor
[0Ksection_start:1724838933:prepare_script
[0K[0K[36;1mPreparing environment[0;m
[0;mRunning on runner-6alfyldv-project-480-concurrent-0 via 8917bc49862a...
section_end:1724838935:prepare_script
[0Ksection_start:1724838935:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m
[0;m[32;1mFetching changes...[0;m
Reinitialized existing Git repository in /builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/.git/
[32;1mChecking out 5000e209 as main...[0;m
Removing enpt_enmapboxapp.egg-info/
[32;1mSkipping Git submodules setup[0;m
section_end:1724838938:get_sources
[0Ksection_start:1724838938:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m
[0;m[32;1m$ git lfs pull[0;m
Skipping object checkout, Git LFS is not installed for this repository.
Consider installing it with 'git lfs install'.
[32;1m$ source /opt/conda/bin/activate ci_env[0;m
WARNING: No ICDs were found. Either,
- Install a conda package providing a OpenCL implementation (pocl, oclgrind, intel-compute-runtime, beignet) or
- Make your system-wide implementation visible by installing ocl-icd-system conda package.
[32;1m$ pip install -e .[0;m
Obtaining file:///builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with status 'done'
Getting requirements to build editable: started
Getting requirements to build editable: finished with status 'done'
Preparing editable metadata (pyproject.toml): started
Preparing editable metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: packaging in /opt/conda/envs/ci_env/lib/python3.11/site-packages (from enpt_enmapboxapp==0.9.0) (23.2)
Requirement already satisfied: psutil in /opt/conda/envs/ci_env/lib/python3.11/site-packages (from enpt_enmapboxapp==0.9.0) (5.9.8)
Building wheels for collected packages: enpt_enmapboxapp
Building editable for enpt_enmapboxapp (pyproject.toml): started
Building editable for enpt_enmapboxapp (pyproject.toml): finished with status 'done'
Created wheel for enpt_enmapboxapp: filename=enpt_enmapboxapp-0.9.0-0.editable-py2.py3-none-any.whl size=7676 sha256=61189934e2d588ac1c1bd32fa9d236bf21e0a504fc310b97f3c14b18b9958183
Stored in directory: /tmp/pip-ephem-wheel-cache-wvci302u/wheels/22/f1/00/37893740ee8e042042bc0d697d8eee9a1fc7a72ecde4a124ac
Successfully built enpt_enmapboxapp
Installing collected packages: enpt_enmapboxapp
Attempting uninstall: enpt_enmapboxapp
Found existing installation: enpt_enmapboxapp 0.9.0
Can't uninstall 'enpt_enmapboxapp'. No files were found to uninstall.
Successfully installed enpt_enmapboxapp-0.9.0
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
[32;1m$ mamba install 'enpt>=0.20.1'[0;m
Transaction
Prefix: /opt/conda/envs/ci_env
Updating specs:
- enpt[version='>=0.20.1']
- ca-certificates
- certifi
- openssl
Package Version Build Channel Size
────────────────────────────────────────────────────────────────────
Upgrade:
────────────────────────────────────────────────────────────────────
- enpt 0.20.0 pyhd8ed1ab_0 conda-forge 276kB
+ enpt 0.20.2 pyhd8ed1ab_0 conda-forge 277kB
- certifi 2024.2.2 pyhd8ed1ab_0 conda-forge 161kB
+ certifi 2024.7.4 pyhd8ed1ab_0 conda-forge 159kB
- ca-certificates 2024.2.2 hbcca054_0 conda-forge 155kB
+ ca-certificates 2024.7.4 hbcca054_0 conda-forge 155kB
- openssl 3.2.1 hd590300_0 conda-forge 3MB
+ openssl 3.3.1 hb9d3cd8_3 conda-forge 3MB
Summary:
Upgrade: 4 packages
Total download: 3MB
────────────────────────────────────────────────────────────────────
Confirm changes: [Y/n]
Looking for: ["enpt[version='>=0.20.1']"]
Pinned packages:
- python 3.11.*
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[32;1m$ export IS_CI_ENV=1[0;m
[32;1m$ export CONDA_ROOT=/opt/conda/[0;m
[32;1m$ export IS_ENPT_GUI_TEST=1[0;m
[32;1m$ export PYTHONPATH=$PYTHONPATH:/tmp/enmapbox[0;m
[32;1m$ export PYTHONPATH=$PYTHONPATH:/opt/conda/envs/ci_env/share/qgis/python/[0;m
[32;1m$ export LD_LIBRARY_PATH=LD_LIBRARY_PATH:/opt/conda/envs/ci_env/lib[0;m
[32;1m$ make pytest[0;m
## don't call coverage erase here because make install calls make clean which calls make clean-test
## -> since make install should run without the test requirements we can't use coverage erase here
rm -fr .tox/
rm -f .coverage
rm -fr .coverage.*
rm -fr htmlcov/
rm -fr report.html
rm -fr report.xml
rm -fr coverage.xml
rm -fr .pytest_cache
## - puts the coverage results in the folder 'htmlcov'
## - generates cobertura 'coverage.xml' (needed to show coverage in GitLab MR changes)
## - generates 'report.html' based on pytest-reporter-html1
## - generates JUnit 'report.xml' to show the test report as a new tab in a GitLab MR
## NOTE: additional options pytest and coverage (plugin pytest-cov) are defined in .pytest.ini and .coveragerc
pytest tests \
--verbosity=3 \
--color=yes \
--tb=short \
--cov=enpt_enmapboxapp \
--cov-report html:htmlcov \
--cov-report term-missing \
--cov-report xml:coverage.xml \
--template=html1/index.html --report=report.html \
--junitxml report.xml
[1m============================= test session starts ==============================[0m
platform linux -- Python 3.11.7, pytest-8.0.0, pluggy-1.4.0 -- /opt/conda/envs/ci_env/bin/python3.11
cachedir: .pytest_cache
rootdir: /builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp
plugins: typeguard-2.13.3, reporter-html1-0.8.3, cov-4.1.0, xvfb-3.0.0, reporter-0.5.2
[1mcollecting ... [0mcollected 4 items
tests/test_enpt_enmapboxapp.py::test_EnPTAlgorithm [32mPASSED[0m[32m [ 25%][0m
tests/test_enpt_enmapboxapp.py::test_ExternalEnPTAlgorithm [32mPASSED[0m[32m [ 50%][0m
tests/test_enpt_enmapboxapp.py::test_with_EnMAPBox [32mPASSED[0m[32m [ 75%][0m
tests/test_enpt_enmapboxapp.py::test_EnPTGUI [32mPASSED[0m[33m [100%][0m
[33m=============================== warnings summary ===============================[0m
tests/test_enpt_enmapboxapp.py::test_with_EnMAPBox
/opt/conda/envs/ci_env/share/qgis/python/qgis/utils.py:888: DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
mod = _builtin_import(name, globals, locals, fromlist, level)
tests/test_enpt_enmapboxapp.py::test_with_EnMAPBox
<frozen importlib._bootstrap>:241: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 232 from PyObject
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
- generated xml file: /builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/report.xml -
- generated report: /builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/report.html -
---------- coverage: platform linux, python 3.11.7-final-0 -----------
Name Stmts Miss Cover Missing
---------------------------------------------------------------------------
enpt_enmapboxapp/__init__.py 8 1 88% 46
enpt_enmapboxapp/_enpt_alg_base.py 198 39 80% 112, 121-129, 143, 466-476, 479, 483, 501, 519-524, 539-544, 551-552, 554-555, 558, 560, 572, 593-598, 603-606, 610, 621-622
enpt_enmapboxapp/enpt_algorithm.py 40 3 92% 50, 62, 73
enpt_enmapboxapp/enpt_enmapboxapp.py 77 23 70% 62, 73-76, 106-107, 119, 124-128, 148-163
enpt_enmapboxapp/enpt_external_algorithm.py 94 27 71% 45-52, 56-61, 68, 73-86, 89, 98, 111, 117, 122, 129-130, 141, 153, 169-176
enpt_enmapboxapp/version.py 8 1 88% 35
---------------------------------------------------------------------------
TOTAL 425 94 78%
Coverage HTML written to dir htmlcov
Coverage XML written to file coverage.xml
[33m======================== [32m4 passed[0m, [33m[1m2 warnings[0m[33m in 47.62s[0m[33m ========================[0m
[32;1m$ make docs[0;m
rm -f docs/enpt_enmapboxapp.rst
rm -f docs/modules.rst
sphinx-apidoc enpt_enmapboxapp -o docs/ --private --doc-project 'Python API Reference'
make -C docs clean
make[1]: Entering directory '/builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/docs'
make[1]: Leaving directory '/builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/docs'
make -C docs html
make[1]: Entering directory '/builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/docs'
Running Sphinx v7.2.6
making output directory... done
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
[2Kreading sources... [ 11%] about
[2Kreading sources... [ 22%] authors
[2Kreading sources... [ 33%] contributing
[2Kreading sources... [ 44%] enpt_enmapboxapp
Application path not initialized
[2Kreading sources... [ 56%] history
[2Kreading sources... [ 67%] index
[2Kreading sources... [ 78%] installation
[2Kreading sources... [ 89%] modules
[2Kreading sources... [100%] usage
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... copying static files... done
copying extra files... done
done
[2Kwriting output... [ 11%] about
[2Kwriting output... [ 22%] authors
[2Kwriting output... [ 33%] contributing
[2Kwriting output... [ 44%] enpt_enmapboxapp
[2Kwriting output... [ 56%] history
[2Kwriting output... [ 67%] index
[2Kwriting output... [ 78%] installation
[2Kwriting output... [ 89%] modules
[2Kwriting output... [100%] usage
generating indices... genindex py-modindex done
[2Khighlighting module code... [ 20%] enpt_enmapboxapp._enpt_alg_base
[2Khighlighting module code... [ 40%] enpt_enmapboxapp.enpt_algorithm
[2Khighlighting module code... [ 60%] enpt_enmapboxapp.enpt_enmapboxapp
[2Khighlighting module code... [ 80%] enpt_enmapboxapp.enpt_external_algorithm
[2Khighlighting module code... [100%] enpt_enmapboxapp.version
writing additional pages... search done
[2Kcopying images... [ 50%] images/screenshot_enpt_enmapboxapp_v0.6.0.png
[2Kcopying images... [100%] images/screenshot_how_to_start.png
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.
The HTML pages are in _build/html.
make[1]: Leaving directory '/builds/EnMAP/GFZ_Tools_EnMAP_BOX/enpt_enmapboxapp/docs'
#make -C docs latex
#make -C docs latexpdf
#python -c "$BROWSER_PYSCRIPT" docs/_build/html/index.html
section_end:1724839089:step_script
[0Ksection_start:1724839089:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m
[0;m[32;1mUploading artifacts...[0;m
htmlcov/: found 15 matching files and directories [0;m
report.html: found 1 matching files and directories[0;m
docs/_build/html/: found 78 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=242196 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
report.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=242196 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
coverage.xml: found 1 matching files and directories[0;m
Uploading artifacts as "cobertura" to coordinator... ok[0;m id[0;m=242196 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1724839094:upload_artifacts_on_success
[0Ksection_start:1724839094:cleanup_file_variables
[0K[0K[36;1mCleaning up file based variables[0;m
[0;msection_end:1724839097:cleanup_file_variables
[0K[32;1mJob succeeded
[0;m