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Get CI runner to work.

Currently, the creation of the CI runner has some issues:

  • # 1 Cloning enmap-box fails for some files
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:36:32 [I]: Cloning into './context/enmapbox'...
Updating files: 100% (5344/5344), done. 23:37:11 [I]: Updating files:   3% (167/5344)
Downloading doc_hubdc/source/examples/projection/raster.bsq (392 MB)ent:  15% (2/13)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: Error downloading object: doc_hubdc/source/examples/projection/raster.bsq (699cba8): Smudge error: Error downloading doc_hubdc/source/examples/projection/raster.bsq (699cba86db23542672087b00db950a9282ebac881090d8fc5d3d99b3bf1ae631): [699cba86db23542672087b00db950a9282ebac881090d8fc5d3d99b3bf1ae631] Object does not exist on the server: [404] Object does not exist on the server
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: Errors logged to /misc/hy5/scheffler/python/enpt_enmapboxapp/tests/gitlab_CI_docker/context/enmapbox/.git/lfs/logs/20210112T233713.608616617.log
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: Use `git lfs logs last` to view the log.
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: error: external filter 'git-lfs filter-process' failed
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: fatal: doc_hubdc/source/examples/projection/raster.bsq: smudge filter lfs failed
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: warning: Clone succeeded, but checkout failed.
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: You can inspect what was checked out with 'git status'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]: and retry with 'git restore --source=HEAD :/'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:37:13 [I]:
  • # 2 Installation of the enmap-box has errors
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:51 [I]: Step 8/9 : RUN bash -i -c "    source /root/miniconda3/bin/activate ci_env ;     cd /tmp/enmapbox/ ;     pip install -r he . ;     conda list"
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:52 [I]:  ---> [Warning] Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:52 [I]:  ---> Running in 7080cfbe5766
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:53 [I]: bash: cannot set terminal process group (-1): Inappropriate ioctl for device
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:53 [I]: bash: no job control in this shell
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:54 [I]: Ignoring GDAL: markers 'platform_system != "Linux"' don't match your environment
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:54 [I]: Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:54 [I]: Requirement already satisfied: numpy>=1.15 in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from -r https://b
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:55 [I]: Requirement already satisfied: pip>=20.0 in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from -r https://bit
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:57 [I]: Collecting matplotlib>=3.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:57 [I]:   Downloading matplotlib-3.3.3-cp39-cp39-manylinux1_x86_64.whl (11.6 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:48:59 [I]: Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /root/miniconda3/envs/ci_env/lib/python3.9/sitp/requirements.txt (line 10)) (2.4.7)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:00 [I]: Requirement already satisfied: python-dateutil>=2.1 in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from matline 10)) (2.8.1)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:00 [I]: Collecting scikit-learn>=0.19.2
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:00 [I]:   Downloading scikit_learn-0.24.0-cp39-cp39-manylinux2010_x86_64.whl (23.8 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:01 [I]: Collecting scipy>=1.1
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:01 [I]:   Downloading scipy-1.6.0-cp39-cp39-manylinux1_x86_64.whl (27.3 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting cycler>=0.10
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Requirement already satisfied: six in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from cycler>=0.10->matploe 10)) (1.15.0)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting joblib>=0.11
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading joblib-1.0.0-py3-none-any.whl (302 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting kiwisolver>=1.0.1
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading kiwisolver-1.3.1-cp39-cp39-manylinux1_x86_64.whl (1.2 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting pillow>=6.2.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading Pillow-8.1.0-cp39-cp39-manylinux1_x86_64.whl (2.2 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting threadpoolctl>=2.0.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading threadpoolctl-2.1.0-py3-none-any.whl (12 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]: Collecting astropy
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:02 [I]:   Downloading astropy-4.2-cp39-cp39-manylinux1_x86_64.whl (9.6 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:03 [I]: Collecting enpt-enmapboxapp
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:03 [I]:   Downloading enpt_enmapboxapp-0.4.3.tar.gz (625 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:03 [I]: Requirement already satisfied: psutil in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from enpt-enmapboxapp-8.0)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:03 [I]: Collecting netCDF4
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:04 [I]:   Downloading netCDF4-1.5.5.1-cp39-cp39-manylinux2014_x86_64.whl (4.8 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:04 [I]: Collecting numba
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:04 [I]:   Downloading numba-0.51.2.tar.gz (2.1 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:05 [I]: Requirement already satisfied: setuptools in /root/miniconda3/envs/ci_env/lib/python3.9/site-packages (from numba->-r httst20201009)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:05 [I]: Collecting llvmlite<0.35,>=0.34.0.dev0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:05 [I]:   Downloading llvmlite-0.34.0.tar.gz (107 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]: Collecting PyOpenGL
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]:   Downloading PyOpenGL-3.1.5-py3-none-any.whl (2.4 MB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]: Collecting cftime
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]:   Downloading cftime-1.3.0-cp39-cp39-manylinux1_x86_64.whl (277 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]: Collecting pyerfa
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]:   Downloading pyerfa-1.7.1.1-cp39-cp39-manylinux2010_x86_64.whl (695 kB)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]: Building wheels for collected packages: enpt-enmapboxapp, numba, llvmlite
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:06 [I]:   Building wheel for enpt-enmapboxapp (setup.py): started
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:07 [I]:   Building wheel for enpt-enmapboxapp (setup.py): finished with status 'done'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:07 [I]:   Created wheel for enpt-enmapboxapp: filename=enpt_enmapboxapp-0.4.3-py2.py3-none-any.whl size=14094 sha256=9563b16b2dc7
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:07 [I]:   Stored in directory: /root/.cache/pip/wheels/78/f1/83/5a89a4b23432991c027c615838e1af70ec35e032d1205b623f
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:07 [I]:   Building wheel for numba (setup.py): started
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:15 [I]:   Building wheel for numba (setup.py): finished with status 'done'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:15 [I]:   Created wheel for numba: filename=numba-0.51.2-cp39-cp39-linux_x86_64.whl size=2346790 sha256=1658db7040c45774741719d2b
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:15 [I]:   Stored in directory: /root/.cache/pip/wheels/0a/51/41/9f5a61bcd9d25271d7021e05cbabcd574fb3d534d07654b780
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:15 [I]:   Building wheel for llvmlite (setup.py): started
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   Building wheel for llvmlite (setup.py): finished with status 'error'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   ERROR: Command errored out with exit status 1:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:    command: /root/miniconda3/envs/ci_env/bin/python3.9 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/ptmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"heel-_6f_tl7o
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:        cwd: /tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   Complete output (26 lines):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   running bdist_wheel
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   /root/miniconda3/envs/ci_env/bin/python3.9 /tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/buil
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   LLVM version... Traceback (most recent call last):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 105, in main_posix
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       out = subprocess.check_output([llvm_config, '--version'])
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 420, in check_output
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 501, in run
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       with Popen(*popenargs, **kwargs) as process:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 947, in __init__
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       self._execute_child(args, executable, preexec_fn, close_fds,
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 1819, in _execute_child
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       raise child_exception_type(errno_num, err_msg, err_filename)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   FileNotFoundError: [Errno 2] No such file or directory: 'llvm-config'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   During handling of the above exception, another exception occurred:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   Traceback (most recent call last):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 191, in <module>
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       main()
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 181, in main
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       main_posix('linux', '.so')
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:     File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 107, in main_posix
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:       raise RuntimeError("%s failed executing, please point LLVM_CONFIG "
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   error: command '/root/miniconda3/envs/ci_env/bin/python3.9' failed with exit code 1
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   ----------------------------------------
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   ERROR: Failed building wheel for llvmlite
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]:   Running setup.py clean for llvmlite
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]: Successfully built enpt-enmapboxapp numba
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]: Failed to build llvmlite
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:16 [I]: Installing collected packages: threadpoolctl, scipy, pyerfa, pillow, llvmlite, kiwisolver, joblib, cycler, cftime, scikit
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     Running setup.py install for llvmlite: started
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     Running setup.py install for llvmlite: finished with status 'error'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     ERROR: Command errored out with exit status 1:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:      command: /root/miniconda3/envs/ci_env/bin/python3.9 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp'/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"ip-record-zy2cgung/install-record.txt --single-version-externally-managed --compile --install-headers /root/miniconda3/envs/ci_env/include/python3.9/llvmlite
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:          cwd: /tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     Complete output (29 lines):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     running install
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     running build
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     got version from file /tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/llvmlite/_version.py {'vers
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     running build_ext
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     /root/miniconda3/envs/ci_env/bin/python3.9 /tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/bu
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     LLVM version... Traceback (most recent call last):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 105, in main_posix
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         out = subprocess.check_output([llvm_config, '--version'])
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 420, in check_output
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 501, in run
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         with Popen(*popenargs, **kwargs) as process:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 947, in __init__
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         self._execute_child(args, executable, preexec_fn, close_fds,
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/root/miniconda3/envs/ci_env/lib/python3.9/subprocess.py", line 1819, in _execute_child
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         raise child_exception_type(errno_num, err_msg, err_filename)
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     FileNotFoundError: [Errno 2] No such file or directory: 'llvm-config'
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     During handling of the above exception, another exception occurred:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     Traceback (most recent call last):
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 191, in <module>
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         main()
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 181, in main
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         main_posix('linux', '.so')
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:       File "/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/ffi/build.py", line 107, in main_posix
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:         raise RuntimeError("%s failed executing, please point LLVM_CONFIG "
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     error: command '/root/miniconda3/envs/ci_env/bin/python3.9' failed with exit code 1
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]:     ----------------------------------------
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:20 [I]: ERROR: Command errored out with exit status 1: /root/miniconda3/envs/ci_env/bin/python3.9 -u -c 'import sys, setuptools, dd72/setup.py'"'"'; __file__='"'"'/tmp/pip-install-1hy2yl1q/llvmlite_09bbd599f7ed460385c9ac59bb7bdd72/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.c'"'"'))' install --record /tmp/pip-record-zy2cgung/install-record.txt --single-version-externally-managed --compile --install-headers /root/miniconda3/envs/ci_env/include/pyt
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:21 [I]: Obtaining file:///tmp/enmapbox
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:22 [I]: Installing collected packages: enmapbox
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:22 [I]:   Running setup.py develop for enmapbox
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/12 23:49:22 [I]: Successfully installed enmapbox
  • folium is somehow installed as version 0.0.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:12 [I]: Collecting folium>=0.6.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:12 [I]:   Downloading folium-0.12.0-py2.py3-none-any.whl (94 kB)
[...]
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]: Installing collected packages: folium, sicor
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:   Attempting uninstall: folium
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:     Found existing installation: folium 0.0.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:     Uninstalling folium-0.0.0:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:       Successfully uninstalled folium-0.0.0
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:   Attempting uninstall: sicor
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:     Found existing installation: sicor 0.15.3
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:     Uninstalling sicor-0.15.3:
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:       Successfully uninstalled sicor-0.15.3
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:14 [I]:   Running setup.py develop for sicor
[CIRUNNER__ENPT_ENMAPBOXAPP] 2021/01/13 00:14:15 [I]: Successfully installed folium-0.12.0 sicor
  • environment on docker image does not allow GUI applications
Edited by Daniel Scheffler